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The map label for this gene is ykfC [H]

Identifier: 150005876

GI number: 150005876

Start: 4214682

End: 4216337

Strand: Direct

Name: ykfC [H]

Synonym: BVU_3372

Alternate gene names: 150005876

Gene position: 4214682-4216337 (Clockwise)

Preceding gene: 150005875

Following gene: 150005877

Centisome position: 81.63

GC content: 43.54

Gene sequence:

>1656_bases
ATGAACGAAATTAAAACATCGTGTGCATCTACTGACCGTAAATGGAGCACTTGGGAAAGCATAGACTGGAACAAGTGTGA
GATAGCGGTTAATAAGCTACAAGCACGTATTGTAAAAGCTCAAAAGGCGGGCAAACACGGCAGGGTGAAATCCTTGCAGT
GGGTGCTGACGCATTCGTTTTACGCTAAGGCTTTAGCCGTAAAGCGTGTTACATCAAACAGTGGCAGTGACACCGCAGGC
GTTGACAAGGTGAAATGGTCAACTCCCAATACCAGATTCAAGGCTATCGGTGAACTGAAAAGAAGAGGCTACAAGCCCCA
GCCGTTAAAAAGGGTCAATATCAAAAAGAGTAACGGGAAACTACGTCCTTTAGGTATCCCGACAATGAAAGATAGGGCTA
TGCAGGCATTATACCTGCTTGCGTTGGAACCTGTATCGGAAACAACTGCGGACAGTAATTCCTACGGTTTCCGTAAAGAG
AGAAGTACCGGAGATGCAAGGGAACAATGTTTTTGTGTCCTTGCAAAGAAAGCTTCTCCCGAATGGATTATGGAGGGTGA
CATCCAAGGTTGTTTCGACCACATCAGCCACGAATGGCTGCTGAACAATATCCCTATGGATAAAGTGATGCTGCGGAAAT
GGCTCAAATGCGGTTTCGTCTTCAACAAGGAGCTATTCCCCACGGAAGAGGGCACTCCACAGGGTGGTATCATCTCACCA
ACTCTTGCGAATATGACACTGGACGGACTGCAAACTATGTTTGCAGAGAAGTATCACAAGAAATTTGTAACCAGGAAAAC
GACCTACTATCCCAAAGTACATCTTGTACGCTATGCGGATGATTTTATCATCACGGGTAGAAGCAAGGAAGCTTTGGAAG
AAATCAAACCGTTAGTAGTGGACTTTCTCCAAGAAAGGGGATTAACCCTGTCGGAAGAGAAAACAAAGATTACACACATT
GATGACGGATTCGATTTTCTCGGGTACAATATCCGGAAATACAAAGGAGTGCTTCTAATCAAACCGTCCAAAAAGAGCCT
GAAGAAATTCATGCAGAAAATCCGAGGAATCATCGATTCCAATAAAGGAAGCAAACAGGAATCACTTATAAGGCTCTTGA
ATCCTGTGATAACAGGCTGGGTAAACTACTACAAGAATTGTGTGGCATCTGATACATTCAGAAAAGCTGACTACCTGATA
TTTGAAAAGTTATGGCAATGGGCTACAAGACGACACCCCAAGAAAGGCAAATATTGGATTGCCGACCGATACTTTACACG
GGTAAAGAACCGTAACTGGTGCTTCGTGGCAAACTTCAAGAAAGGCAAGACTGATGACAGGATTGCTCTGAAAAGGCTGT
ATGACACAAAGATTACCCGATATGTCAAGGTAAAAGGTGAAGCAAATCCCTTTGACCCCGAATGGACAGAGTATTTTGAA
AAGCGCAAGACTTACAAGATGCTACAGTCGCTCAACGGCAGAAAATCATTGCTGTACATGTGGGAAAGACAGGACCATTT
ATGTCCCGTATGTGGTAAACCCATAGACAAGGAACATCCTTGGGGAACTTCCCAACAAATAGTCAACGGCAAGAAAGTAA
ATAATCTGCTACATGACAGTTGTAGAAGAAAAGTCATTCAAACTAATAAGATGTAA

Upstream 100 bases:

>100_bases
GGATAGAGGTTGAAACATCACCTCACACGAAAGTGGGCAGACTTCCGCATGGTGGATGTTTTACAAGAAACTTATAGAAC
TTATTAAAGGAGAAAAGCAA

Downstream 100 bases:

>100_bases
CTATGAGCTGGTTTCTATTAAATAGAAATTTAACACTGCTTGAGCCGTATGATTGGAAACTTTCACGTACGGTTCTGAGG
GGGGAAAGGGGCAGTAATGC

Product: putative reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MNEIKTSCASTDRKWSTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNTRFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTGDAREQCFCVLAKKASPEWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMFAEKYHKKFVTRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVVDFLQERGLTLSEEKTKITHI
DDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLI
FEKLWQWATRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
KRKTYKMLQSLNGRKSLLYMWERQDHLCPVCGKPIDKEHPWGTSQQIVNGKKVNNLLHDSCRRKVIQTNKM

Sequences:

>Translated_551_residues
MNEIKTSCASTDRKWSTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNTRFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTGDAREQCFCVLAKKASPEWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMFAEKYHKKFVTRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVVDFLQERGLTLSEEKTKITHI
DDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLI
FEKLWQWATRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
KRKTYKMLQSLNGRKSLLYMWERQDHLCPVCGKPIDKEHPWGTSQQIVNGKKVNNLLHDSCRRKVIQTNKM
>Mature_551_residues
MNEIKTSCASTDRKWSTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSFYAKALAVKRVTSNSGSDTAG
VDKVKWSTPNTRFKAIGELKRRGYKPQPLKRVNIKKSNGKLRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKE
RSTGDAREQCFCVLAKKASPEWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
TLANMTLDGLQTMFAEKYHKKFVTRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVVDFLQERGLTLSEEKTKITHI
DDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDSNKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLI
FEKLWQWATRRHPKKGKYWIADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
KRKTYKMLQSLNGRKSLLYMWERQDHLCPVCGKPIDKEHPWGTSQQIVNGKKVNNLLHDSCRRKVIQTNKM

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=328, Percent_Identity=25.609756097561, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6226520, Length=317, Percent_Identity=29.3375394321767, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 64089; Mature: 64089

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIKTSCASTDRKWSTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSF
CCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YAKALAVKRVTSNSGSDTAGVDKVKWSTPNTRFKAIGELKRRGYKPQPLKRVNIKKSNGK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTGDAREQCFCVLAKKASP
EEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
EWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
CEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCC
TLANMTLDGLQTMFAEKYHKKFVTRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHH
DFLQERGLTLSEEKTKITHIDDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDS
HHHHHCCCCCCCCCCEEEEECCCCHHHCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHCC
NKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLIFEKLWQWATRRHPKKGKYWI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
ADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHH
KRKTYKMLQSLNGRKSLLYMWERQDHLCPVCGKPIDKEHPWGTSQQIVNGKKVNNLLHDS
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
CRRKVIQTNKM
HHHHHHHCCCC
>Mature Secondary Structure
MNEIKTSCASTDRKWSTWESIDWNKCEIAVNKLQARIVKAQKAGKHGRVKSLQWVLTHSF
CCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YAKALAVKRVTSNSGSDTAGVDKVKWSTPNTRFKAIGELKRRGYKPQPLKRVNIKKSNGK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTGDAREQCFCVLAKKASP
EEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
EWIMEGDIQGCFDHISHEWLLNNIPMDKVMLRKWLKCGFVFNKELFPTEEGTPQGGIISP
CEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCC
TLANMTLDGLQTMFAEKYHKKFVTRKTTYYPKVHLVRYADDFIITGRSKEALEEIKPLVV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHH
DFLQERGLTLSEEKTKITHIDDGFDFLGYNIRKYKGVLLIKPSKKSLKKFMQKIRGIIDS
HHHHHCCCCCCCCCCEEEEECCCCHHHCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHCC
NKGSKQESLIRLLNPVITGWVNYYKNCVASDTFRKADYLIFEKLWQWATRRHPKKGKYWI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
ADRYFTRVKNRNWCFVANFKKGKTDDRIALKRLYDTKITRYVKVKGEANPFDPEWTEYFE
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHH
KRKTYKMLQSLNGRKSLLYMWERQDHLCPVCGKPIDKEHPWGTSQQIVNGKKVNNLLHDS
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
CRRKVIQTNKM
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]