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The map label for this gene is yiaD [H]

Identifier: 150005847

GI number: 150005847

Start: 4178348

End: 4179067

Strand: Direct

Name: yiaD [H]

Synonym: BVU_3343

Alternate gene names: 150005847

Gene position: 4178348-4179067 (Clockwise)

Preceding gene: 150005846

Following gene: 150005848

Centisome position: 80.93

GC content: 45.42

Gene sequence:

>720_bases
ATGAAAAAGACTAAAATTATGGCTTTATTACTGAGTGCTACATTAGTATTCAGTGGATGTGGTAACATGAATAATACCGC
TAAAGGCGGTCTGATCGGCGGCGGCGGCGGTGCAGCATTGGGAGCAATTATCGGCGGAATAGCCGGACATGGTAAAGGTG
CGGCTATTGGTGCGGCAGTAGGTGCGGCAGTAGGTACAGGTGCCGGTGTGTTAATTGGGAAAAAAATGGATAAAGCAGCA
GAAGAAGCTGCTCAAATCCAAGGAGCACAGGTAGAACAAGTAACAGATAACAATGGCCTTCAGGCTGTAAAAGTTACTTT
TGATTCCGGTATTCTCTTCAATACAGGAAATGCAGCCTTGAGTGCACAAGCGAAATCAGCCTTGAGCAAGTTTGCAAACA
ACGTATTGAACCAGAACAGAGATATGGATGTATCCATTTATGGATATACAGACAACCAGGGCTGGAGAAACAGTACAGCT
GAACAAAGTATCCAAAAAAACCTCAATCTGTCACAAGAACGCGCTCAAAGTGTGGCTAGTTATCTGTTGGGTTGCGGTGT
AAGTAATTCCCAGATCAAGTCCGTAGAAGGCTTGGGTCAAGCAGATCCGATAGGTAATAATGACACAGCCGAGGGACGCC
AGCAGAACCGTCGTGTAGAAGTATATATGTATGCCAGCCAACAGATGATTCAGCAAGCGGAAGCAGGAACACTGAAATGA

Upstream 100 bases:

>100_bases
GATCTGGTTTATGCTTATCAAGAAGAAAGCTTTAAATTATCAGGCCGTTTAATGAACAATTTTTGCATTAAGTCATTAAT
ATATTAAAATGAACATGATT

Downstream 100 bases:

>100_bases
TATCAATGACGTTATTGTAGAGCGTATCCAATACGCCCGAACCAACGGTCACAACATTGGAATAACATATAAAATAAACC
AATTTCGGACAGGTTATTTC

Product: OmpA family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKKTKIMALLLSATLVFSGCGNMNNTAKGGLIGGGGGAALGAIIGGIAGHGKGAAIGAAVGAAVGTGAGVLIGKKMDKAA
EEAAQIQGAQVEQVTDNNGLQAVKVTFDSGILFNTGNAALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTA
EQSIQKNLNLSQERAQSVASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEVYMYASQQMIQQAEAGTLK

Sequences:

>Translated_239_residues
MKKTKIMALLLSATLVFSGCGNMNNTAKGGLIGGGGGAALGAIIGGIAGHGKGAAIGAAVGAAVGTGAGVLIGKKMDKAA
EEAAQIQGAQVEQVTDNNGLQAVKVTFDSGILFNTGNAALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTA
EQSIQKNLNLSQERAQSVASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEVYMYASQQMIQQAEAGTLK
>Mature_239_residues
MKKTKIMALLLSATLVFSGCGNMNNTAKGGLIGGGGGAALGAIIGGIAGHGKGAAIGAAVGAAVGTGAGVLIGKKMDKAA
EEAAQIQGAQVEQVTDNNGLQAVKVTFDSGILFNTGNAALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTA
EQSIQKNLNLSQERAQSVASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEVYMYASQQMIQQAEAGTLK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=244, Percent_Identity=29.0983606557377, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787191, Length=146, Percent_Identity=29.4520547945205, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24483; Mature: 24483

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTKIMALLLSATLVFSGCGNMNNTAKGGLIGGGGGAALGAIIGGIAGHGKGAAIGAAV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHH
GAAVGTGAGVLIGKKMDKAAEEAAQIQGAQVEQVTDNNGLQAVKVTFDSGILFNTGNAAL
HHHHCCCCEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCEEEECCCCHH
SAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSIQKNLNLSQERAQSVAS
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
YLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEVYMYASQQMIQQAEAGTLK
HHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEEEHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKTKIMALLLSATLVFSGCGNMNNTAKGGLIGGGGGAALGAIIGGIAGHGKGAAIGAAV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHH
GAAVGTGAGVLIGKKMDKAAEEAAQIQGAQVEQVTDNNGLQAVKVTFDSGILFNTGNAAL
HHHHCCCCEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCEEEECCCCHH
SAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSIQKNLNLSQERAQSVAS
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
YLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEVYMYASQQMIQQAEAGTLK
HHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]