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The map label for this gene is ihfA [C]

Identifier: 150005791

GI number: 150005791

Start: 4114283

End: 4115713

Strand: Direct

Name: ihfA [C]

Synonym: BVU_3284

Alternate gene names: 150005791

Gene position: 4114283-4115713 (Clockwise)

Preceding gene: 150005790

Following gene: 150005792

Centisome position: 79.68

GC content: 38.5

Gene sequence:

>1431_bases
ATGAGCGAGAAAGTAACCATACAAGATATCATCGAACTTTTGGCTGAGAAACACAGCATGACTAAAAAAGATGCTGAAAT
CTTTGTCAAAGGAATGTTTGAACTGATAGAGGAAGCTTTAGTTACTGAAAAGTATGTAAAGGTTAAAGGACTAGGTACGT
TTAAACTTACAGAGGTGGAGAGTCGTGAAAGTGTAAACGTAAATACGGGGGAAAGAATTGAAATACAGGGCCATACAAAA
ATATCTTTTACTCCGGATTCCAGTATGAAAGATTTAATAAATAAACCATTCGCTCATTTTGAAACGGTTATATTAAATGA
AAACACCAAACTGGAAGATACCGAAACAGAAATAGAAGGAGAGGAGGAAGATACCTTTGACGGAAACGCGCCTAAGCCTA
AACAAACAATTGCGGCTAAAGAGGTTGAGTTCATAGAAGCGGAAAATACAGAAGATTCTCCAAATGAGAATGCCATTGCC
GCTGAAGACACTACTCCGGTTATTGAGGAAACAATTATTGAAGAACCTGTACCTTCTGTTGAAATTACAGAGGAAAAGAT
ACAAATTATAGAACCGGAAAAAGAATCGGAAGATATTGTCACTGAAGCAGAAAAGGATATTGTTGCTGAAACAGCTGTTC
CCCAAACGGTTTCCCCTTTAGCAGAAACAATAGAAGGAAACGAGGTAACAGACAAACCTCAAGAAGAAGTTATGACTATC
GCCGATGCAGCCATACTGGCTGCTCGTAAAGCTTGTGAAGAAAAAACATCCTTGGAAACAATAGCGTCAGAAGAGGCAAC
CCCGTCAGAGAAAACAGTAATAACTCCTGTTACTTCTGATTTTGAAAAAGAACAGAAGATAGAGGAAACAACAGAGACAC
AAGAAATCTCAGAAGAGAAAAAGAACAGAGTTTCCCAGGGAGTTATTCTTGCTATCATTTTGATTGCCTGCATTGCAGGT
GGCATATATTGGTATTTGCAATCAGATAAAACTTCGGATTTACAATCGCCGGCTACAATAAAAAACACCCAAGAACAATT
GGAAGAGGATATTCCTGCAATTCCGGTTAATGACTCATTGATGCAAGGTAAAGATACCGCAAACATATGGACGAATGTTG
CCGGAAAAGAGACCATCAGTCAATCACAACAGACTGTATCTCCTAGTACGGAAAAGAGTTCAGGCGTTGCGACAACCGCA
AATGTTGCAAAAGAGACTTTAGCCGACACTGTAGAATATGACATAACAGGGACTAAAACTAATTACACATTACAAGAAGG
AGAGAGTCTGGTAAAATTAGCAGTGAAATTCTATGGTACAAAAAAGCTATGGCCCTATATCGTGAAACATAATAAAAACA
TCATTAAAGATGCCGACAGAGTACCCATAGGGACTACTCTGCGTATTCCTGAACTAACTCCTAAAAAATAA

Upstream 100 bases:

>100_bases
CAACGTATGCTGATTCCCCCCAAGTTAGTGCTGACTTACAAACCCAGTGTAACTTTAAAAGAAAAGTTTAAATAAAATAG
CCCTTATTTATAATATTATC

Downstream 100 bases:

>100_bases
GCCTTCTTGCATTTTGCCTGCTTTCGGCATAAATAAAGCAGGCAAAATACAAGAAGTAAAAAAAAGTGCGTTCAACTGAT
ATTCTCACTCTACAAACCTT

Product: putative integration host factor IHF alpha subunit

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESVNVNTGERIEIQGHTK
ISFTPDSSMKDLINKPFAHFETVILNENTKLEDTETEIEGEEEDTFDGNAPKPKQTIAAKEVEFIEAENTEDSPNENAIA
AEDTTPVIEETIIEEPVPSVEITEEKIQIIEPEKESEDIVTEAEKDIVAETAVPQTVSPLAETIEGNEVTDKPQEEVMTI
ADAAILAARKACEEKTSLETIASEEATPSEKTVITPVTSDFEKEQKIEETTETQEISEEKKNRVSQGVILAIILIACIAG
GIYWYLQSDKTSDLQSPATIKNTQEQLEEDIPAIPVNDSLMQGKDTANIWTNVAGKETISQSQQTVSPSTEKSSGVATTA
NVAKETLADTVEYDITGTKTNYTLQEGESLVKLAVKFYGTKKLWPYIVKHNKNIIKDADRVPIGTTLRIPELTPKK

Sequences:

>Translated_476_residues
MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESVNVNTGERIEIQGHTK
ISFTPDSSMKDLINKPFAHFETVILNENTKLEDTETEIEGEEEDTFDGNAPKPKQTIAAKEVEFIEAENTEDSPNENAIA
AEDTTPVIEETIIEEPVPSVEITEEKIQIIEPEKESEDIVTEAEKDIVAETAVPQTVSPLAETIEGNEVTDKPQEEVMTI
ADAAILAARKACEEKTSLETIASEEATPSEKTVITPVTSDFEKEQKIEETTETQEISEEKKNRVSQGVILAIILIACIAG
GIYWYLQSDKTSDLQSPATIKNTQEQLEEDIPAIPVNDSLMQGKDTANIWTNVAGKETISQSQQTVSPSTEKSSGVATTA
NVAKETLADTVEYDITGTKTNYTLQEGESLVKLAVKFYGTKKLWPYIVKHNKNIIKDADRVPIGTTLRIPELTPKK
>Mature_475_residues
SEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESVNVNTGERIEIQGHTKI
SFTPDSSMKDLINKPFAHFETVILNENTKLEDTETEIEGEEEDTFDGNAPKPKQTIAAKEVEFIEAENTEDSPNENAIAA
EDTTPVIEETIIEEPVPSVEITEEKIQIIEPEKESEDIVTEAEKDIVAETAVPQTVSPLAETIEGNEVTDKPQEEVMTIA
DAAILAARKACEEKTSLETIASEEATPSEKTVITPVTSDFEKEQKIEETTETQEISEEKKNRVSQGVILAIILIACIAGG
IYWYLQSDKTSDLQSPATIKNTQEQLEEDIPAIPVNDSLMQGKDTANIWTNVAGKETISQSQQTVSPSTEKSSGVATTAN
VAKETLADTVEYDITGTKTNYTLQEGESLVKLAVKFYGTKKLWPYIVKHNKNIIKDADRVPIGTTLRIPELTPKK

Specific function: This Protein Is One Of The Two Subunits Of Integration Host Factor, A Specific DNA-Binding Protein That Functions In Genetic Recombination As Well As In Transcriptional And Translational Control. Ihf Also Plays A Crucial Role In The Lysogenic Life Cycle O

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52638; Mature: 52507

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECC
SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINKPFAHFETVILNENTKLEDTETEIEG
CCCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHCCHHHHEEEEECCCCCCCCCHHHCCC
EEEDTFDGNAPKPKQTIAAKEVEFIEAENTEDSPNENAIAAEDTTPVIEETIIEEPVPSV
CCCCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCC
EITEEKIQIIEPEKESEDIVTEAEKDIVAETAVPQTVSPLAETIEGNEVTDKPQEEVMTI
EECCCHHEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
ADAAILAARKACEEKTSLETIASEEATPSEKTVITPVTSDFEKEQKIEETTETQEISEEK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
KNRVSQGVILAIILIACIAGGIYWYLQSDKTSDLQSPATIKNTQEQLEEDIPAIPVNDSL
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
MQGKDTANIWTNVAGKETISQSQQTVSPSTEKSSGVATTANVAKETLADTVEYDITGTKT
HCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCC
NYTLQEGESLVKLAVKFYGTKKLWPYIVKHNKNIIKDADRVPIGTTLRIPELTPKK
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECC
SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINKPFAHFETVILNENTKLEDTETEIEG
CCCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHCCHHHHEEEEECCCCCCCCCHHHCCC
EEEDTFDGNAPKPKQTIAAKEVEFIEAENTEDSPNENAIAAEDTTPVIEETIIEEPVPSV
CCCCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCC
EITEEKIQIIEPEKESEDIVTEAEKDIVAETAVPQTVSPLAETIEGNEVTDKPQEEVMTI
EECCCHHEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
ADAAILAARKACEEKTSLETIASEEATPSEKTVITPVTSDFEKEQKIEETTETQEISEEK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
KNRVSQGVILAIILIACIAGGIYWYLQSDKTSDLQSPATIKNTQEQLEEDIPAIPVNDSL
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
MQGKDTANIWTNVAGKETISQSQQTVSPSTEKSSGVATTANVAKETLADTVEYDITGTKT
HCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCC
NYTLQEGESLVKLAVKFYGTKKLWPYIVKHNKNIIKDADRVPIGTTLRIPELTPKK
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA