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The map label for this gene is cydB [H]

Identifier: 150005322

GI number: 150005322

Start: 3569850

End: 3570995

Strand: Reverse

Name: cydB [H]

Synonym: BVU_2798

Alternate gene names: 150005322

Gene position: 3570995-3569850 (Counterclockwise)

Preceding gene: 150005323

Following gene: 150005318

Centisome position: 69.16

GC content: 45.72

Gene sequence:

>1146_bases
ATGGACTATATATTTCTACAAAATTATTGGTGGTTCCTAGTATCGTTACTGGGTGCTTTGTTGGTGTTCCTGCTCTTTGT
GCAGGGTGGCAACTCTTTGCTGTTCACGCTGGGACGCAATGACGAAGAACGTGCCTTGCTGGTAAACTCCACAGGACGCA
AGTGGGAGTTTACTTTTACCACCCTTGTCACTTTCGGCGGCGCCTTCTTCGCTTCTTTTCCGCTGTTCTACAGTACCAGC
TTTGGCGGTGCTTACTGGTTGTGGATGATTATTCTTTTCAGTTTCGTATTGCAAGCTGTTTCATACGAGTTCCAGTCCAA
GCTGGGCAATCTGCTGGGCAAACATACTTACCAATGGTTTCTGGTTATAAATGGTATTGTAGGGCCTCTATTGCTGGGAG
GTGCGGTAGCCACATTCTTTACCGGCTCCAATTTCCTGGTTAATAAAGGAAACATGGGTAATGAGCTGATGCCTGTCATC
AGCAGTTGGGCAAACGGATGGCACGGACTGGATGCGCTGACCAATCCTTGGAATCTGGTCTTGGGATTTGCCGTATTCTT
CCTGGCCCGCCTTTTGGGCAATCTTTATTTTATCAATAACATCCGGGATAAAGACTTAATCCCCCGCTGCCGCCGTCAGC
TTATAACAGATGCTATTCCTTTCCTTATTCTATTTCTGGCATTTGTTATCCGTACTTTATTGGCTGATGGTTTCGCTGTA
AATCCCGAGACAAAAGAAGTTTATATGGAACCTTACAAGTATTTCATCAATCTGATGGATATACCTCTATTGCTGGTATT
GTTCCTATCAGGCGTTGTCGGGGTACTTTGGGGTATCGGAAGGGCTGTCTTCAGCAAGACTGCGACCAATGGTATCTGGT
TTACCGGAATAGGAGTTGTATTGACTGTATTAGCTTTATTGCTTTGTGCGGGATATAATAATACGGCTTATTACCCGTCC
ACAGCCGATCTACAAAGTTCGCTGACCTTGGCAAACAGTTGCTCCAGCGAATTTACCCTGCGCACCATGGCATACGTTTC
CATTCTGGTACCTTTCGTTCTGGCCTATATTATTTATGCTTGGCGTGCCATAGACCGCAAGCCCATTACAGCAAAGGAAC
TGGAACAAGACGGACACGCTTATTAA

Upstream 100 bases:

>100_bases
ACAGGAGATTAATTCCGCCAGCAAGTCATTCTTTTTTTAGTTCAAGTTTCTCTAATTCTATTTTTCAATATTCAATTCTC
AATTTTTAATTTAGAATATT

Downstream 100 bases:

>100_bases
AGAGTCTTAATGGATTATAGTGAAGGCATCCTGTTTTGCAAATAGCTGTAAACAGGATGCCTTTCTATGTTAAATAACAT
TGTTTCAACCTATAAAATGA

Product: cytochrome D ubiquinol oxidase subunit II

Products: Ubiquinone-8; H2O. [C]

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDYIFLQNYWWFLVSLLGALLVFLLFVQGGNSLLFTLGRNDEERALLVNSTGRKWEFTFTTLVTFGGAFFASFPLFYSTS
FGGAYWLWMIILFSFVLQAVSYEFQSKLGNLLGKHTYQWFLVINGIVGPLLLGGAVATFFTGSNFLVNKGNMGNELMPVI
SSWANGWHGLDALTNPWNLVLGFAVFFLARLLGNLYFINNIRDKDLIPRCRRQLITDAIPFLILFLAFVIRTLLADGFAV
NPETKEVYMEPYKYFINLMDIPLLLVLFLSGVVGVLWGIGRAVFSKTATNGIWFTGIGVVLTVLALLLCAGYNNTAYYPS
TADLQSSLTLANSCSSEFTLRTMAYVSILVPFVLAYIIYAWRAIDRKPITAKELEQDGHAY

Sequences:

>Translated_381_residues
MDYIFLQNYWWFLVSLLGALLVFLLFVQGGNSLLFTLGRNDEERALLVNSTGRKWEFTFTTLVTFGGAFFASFPLFYSTS
FGGAYWLWMIILFSFVLQAVSYEFQSKLGNLLGKHTYQWFLVINGIVGPLLLGGAVATFFTGSNFLVNKGNMGNELMPVI
SSWANGWHGLDALTNPWNLVLGFAVFFLARLLGNLYFINNIRDKDLIPRCRRQLITDAIPFLILFLAFVIRTLLADGFAV
NPETKEVYMEPYKYFINLMDIPLLLVLFLSGVVGVLWGIGRAVFSKTATNGIWFTGIGVVLTVLALLLCAGYNNTAYYPS
TADLQSSLTLANSCSSEFTLRTMAYVSILVPFVLAYIIYAWRAIDRKPITAKELEQDGHAY
>Mature_381_residues
MDYIFLQNYWWFLVSLLGALLVFLLFVQGGNSLLFTLGRNDEERALLVNSTGRKWEFTFTTLVTFGGAFFASFPLFYSTS
FGGAYWLWMIILFSFVLQAVSYEFQSKLGNLLGKHTYQWFLVINGIVGPLLLGGAVATFFTGSNFLVNKGNMGNELMPVI
SSWANGWHGLDALTNPWNLVLGFAVFFLARLLGNLYFINNIRDKDLIPRCRRQLITDAIPFLILFLAFVIRTLLADGFAV
NPETKEVYMEPYKYFINLMDIPLLLVLFLSGVVGVLWGIGRAVFSKTATNGIWFTGIGVVLTVLALLLCAGYNNTAYYPS
TADLQSSLTLANSCSSEFTLRTMAYVSILVPFVLAYIIYAWRAIDRKPITAKELEQDGHAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=405, Percent_Identity=27.6543209876543, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787213, Length=401, Percent_Identity=25.6857855361596, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 42793; Mature: 42793

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYIFLQNYWWFLVSLLGALLVFLLFVQGGNSLLFTLGRNDEERALLVNSTGRKWEFTFT
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCEEEEEHH
TLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKLGNLLGKHTYQWF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVINGIVGPLLLGGAVATFFTGSNFLVNKGNMGNELMPVISSWANGWHGLDALTNPWNLV
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHH
LGFAVFFLARLLGNLYFINNIRDKDLIPRCRRQLITDAIPFLILFLAFVIRTLLADGFAV
HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NPETKEVYMEPYKYFINLMDIPLLLVLFLSGVVGVLWGIGRAVFSKTATNGIWFTGIGVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LTVLALLLCAGYNNTAYYPSTADLQSSLTLANSCSSEFTLRTMAYVSILVPFVLAYIIYA
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WRAIDRKPITAKELEQDGHAY
HHHHCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MDYIFLQNYWWFLVSLLGALLVFLLFVQGGNSLLFTLGRNDEERALLVNSTGRKWEFTFT
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCEEEEEHH
TLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKLGNLLGKHTYQWF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVINGIVGPLLLGGAVATFFTGSNFLVNKGNMGNELMPVISSWANGWHGLDALTNPWNLV
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHH
LGFAVFFLARLLGNLYFINNIRDKDLIPRCRRQLITDAIPFLILFLAFVIRTLLADGFAV
HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NPETKEVYMEPYKYFINLMDIPLLLVLFLSGVVGVLWGIGRAVFSKTATNGIWFTGIGVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LTVLALLLCAGYNNTAYYPSTADLQSSLTLANSCSSEFTLRTMAYVSILVPFVLAYIIYA
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WRAIDRKPITAKELEQDGHAY
HHHHCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]