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The map label for this gene is irpA [H]

Identifier: 150005299

GI number: 150005299

Start: 3538283

End: 3539464

Strand: Reverse

Name: irpA [H]

Synonym: BVU_2771

Alternate gene names: 150005299

Gene position: 3539464-3538283 (Counterclockwise)

Preceding gene: 150005300

Following gene: 150005298

Centisome position: 68.55

GC content: 41.54

Gene sequence:

>1182_bases
ATGAAAAGTTTGTTAAAAATCCCCTTACTTGTTGCTGTAGCAACAATGATGACTTGCAGTTTCAGCGCATGCAGTGATAA
CGATGATCCGACTCCGGATACCGGTACGTCTGAAACAGATGCAAAATTCAAAGCAATCGCAAAACAGTATCTTGATCACA
CGGTATATGTTACTTACAAGAACCTGGCTGATGAAACCGAACAGCTAGTAAAAGATTTACAAGCATTAAAAAGCAGCAAG
ACTGATGCAAATGTAAAAGCTACCTGCGAAACCTTCCTTGAAGCACGTGCATGGTGGGAAAAGAGTGAAGCTTTCCTGTA
TGGGGCAGCTACCGATTTCGGTATCGACCCGCATATTGACTCATGGCCTTTGGACTTGGACGGATTACAGACCGCACTGA
AAAATACGGAACAGGTAGAAGCAATGGGTGGTGAAGACGGAGATATTTATGCCGGCGAGAAATTGGGTAATTCTTTATTA
GGATTTCATGGTATTGAATACATCCTTTTCGAAGATGGTAGCCCCAAATCAGTTTCTAAAATCAGTGACTTACATCTGAC
TTACGCCGTAGCTGTAGCTGGTGATTTGCGTAACCGTTGCTGGCAGCTGGAACTTTCATGGAGAGGCGAAAGTGCTGTCA
ATGCCGACCGTGTCGCTAAAGTCGCAAATGAGTTAGAACTGCCTTACACTGTAAACAGTGGTGAATATTCTTATGGTGAG
AATATGCTGAATGCAGGAAAAGCAGGTAGTACATACGCCAGCTGGACATTGGCCATGCAAGCTATCATTGACGGCTGCAA
GACTATCGCAGATGAAGTAGGAACTTCTAAAATAGGAAAACCTTATAGCGGAGAAGACCCTGCTTATATAGAATCACCAT
ACAGTCACAAGTCCATTCTAGACTTTTATGACAACATCATCAGTATTCAGAATGCTTACATGGGCGGTATAGAAAATGAA
CGTGACGAAACCAACTCACTACACAACTATATTGCTGGAGTAGATAAAGAACTGGATACAAAAGTTGTAAATGCCATAAA
CAATGCTCTGACCAAAATCAATGCCATGGCAGCTCCATTTGTAAACAATATTAAAGATCCAAGTGCAGGTGAAGCAATTA
AAGCTTGTCAGGATCTTGATGCCATATTGTCTGATGTTAAAACAGCTTTAAGAAACAATTAA

Upstream 100 bases:

>100_bases
AAGCCAGTATAATAACGAACCCTCTTTTTCATTGGGCATAGCTTATGCAGGATTTTTCATTAAATAAACCCGATTATTCA
TTTTTTAAAATTAAATAGGT

Downstream 100 bases:

>100_bases
AAAGAACTGTTTACCCCAATGACCACAAAGGATCTGCAAGAGGGTGTCCGGAAAAGGTCTATTGTACTATCTTTTGCTGT
AGATGGTGATTTTACATTCG

Product: putative iron-regulated protein A precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKSLLKIPLLVAVATMMTCSFSACSDNDDPTPDTGTSETDAKFKAIAKQYLDHTVYVTYKNLADETEQLVKDLQALKSSK
TDANVKATCETFLEARAWWEKSEAFLYGAATDFGIDPHIDSWPLDLDGLQTALKNTEQVEAMGGEDGDIYAGEKLGNSLL
GFHGIEYILFEDGSPKSVSKISDLHLTYAVAVAGDLRNRCWQLELSWRGESAVNADRVAKVANELELPYTVNSGEYSYGE
NMLNAGKAGSTYASWTLAMQAIIDGCKTIADEVGTSKIGKPYSGEDPAYIESPYSHKSILDFYDNIISIQNAYMGGIENE
RDETNSLHNYIAGVDKELDTKVVNAINNALTKINAMAAPFVNNIKDPSAGEAIKACQDLDAILSDVKTALRNN

Sequences:

>Translated_393_residues
MKSLLKIPLLVAVATMMTCSFSACSDNDDPTPDTGTSETDAKFKAIAKQYLDHTVYVTYKNLADETEQLVKDLQALKSSK
TDANVKATCETFLEARAWWEKSEAFLYGAATDFGIDPHIDSWPLDLDGLQTALKNTEQVEAMGGEDGDIYAGEKLGNSLL
GFHGIEYILFEDGSPKSVSKISDLHLTYAVAVAGDLRNRCWQLELSWRGESAVNADRVAKVANELELPYTVNSGEYSYGE
NMLNAGKAGSTYASWTLAMQAIIDGCKTIADEVGTSKIGKPYSGEDPAYIESPYSHKSILDFYDNIISIQNAYMGGIENE
RDETNSLHNYIAGVDKELDTKVVNAINNALTKINAMAAPFVNNIKDPSAGEAIKACQDLDAILSDVKTALRNN
>Mature_393_residues
MKSLLKIPLLVAVATMMTCSFSACSDNDDPTPDTGTSETDAKFKAIAKQYLDHTVYVTYKNLADETEQLVKDLQALKSSK
TDANVKATCETFLEARAWWEKSEAFLYGAATDFGIDPHIDSWPLDLDGLQTALKNTEQVEAMGGEDGDIYAGEKLGNSLL
GFHGIEYILFEDGSPKSVSKISDLHLTYAVAVAGDLRNRCWQLELSWRGESAVNADRVAKVANELELPYTVNSGEYSYGE
NMLNAGKAGSTYASWTLAMQAIIDGCKTIADEVGTSKIGKPYSGEDPAYIESPYSHKSILDFYDNIISIQNAYMGGIENE
RDETNSLHNYIAGVDKELDTKVVNAINNALTKINAMAAPFVNNIKDPSAGEAIKACQDLDAILSDVKTALRNN

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 42828; Mature: 42828

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLKIPLLVAVATMMTCSFSACSDNDDPTPDTGTSETDAKFKAIAKQYLDHTVYVTYK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEH
NLADETEQLVKDLQALKSSKTDANVKATCETFLEARAWWEKSEAFLYGAATDFGIDPHID
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
SWPLDLDGLQTALKNTEQVEAMGGEDGDIYAGEKLGNSLLGFHGIEYILFEDGSPKSVSK
CCCCCHHHHHHHHCCHHHHHHCCCCCCCEECCHHHCCHHHHHCCEEEEEECCCCCHHHHH
ISDLHLTYAVAVAGDLRNRCWQLELSWRGESAVNADRVAKVANELELPYTVNSGEYSYGE
HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCHHCH
NMLNAGKAGSTYASWTLAMQAIIDGCKTIADEVGTSKIGKPYSGEDPAYIESPYSHKSIL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHHH
DFYDNIISIQNAYMGGIENERDETNSLHNYIAGVDKELDTKVVNAINNALTKINAMAAPF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VNNIKDPSAGEAIKACQDLDAILSDVKTALRNN
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSLLKIPLLVAVATMMTCSFSACSDNDDPTPDTGTSETDAKFKAIAKQYLDHTVYVTYK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEH
NLADETEQLVKDLQALKSSKTDANVKATCETFLEARAWWEKSEAFLYGAATDFGIDPHID
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
SWPLDLDGLQTALKNTEQVEAMGGEDGDIYAGEKLGNSLLGFHGIEYILFEDGSPKSVSK
CCCCCHHHHHHHHCCHHHHHHCCCCCCCEECCHHHCCHHHHHCCEEEEEECCCCCHHHHH
ISDLHLTYAVAVAGDLRNRCWQLELSWRGESAVNADRVAKVANELELPYTVNSGEYSYGE
HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCHHCH
NMLNAGKAGSTYASWTLAMQAIIDGCKTIADEVGTSKIGKPYSGEDPAYIESPYSHKSIL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHHH
DFYDNIISIQNAYMGGIENERDETNSLHNYIAGVDKELDTKVVNAINNALTKINAMAAPF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VNNIKDPSAGEAIKACQDLDAILSDVKTALRNN
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]