Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 148828051

GI number: 148828051

Start: 1451559

End: 1452305

Strand: Direct

Name: yibD [C]

Synonym: CGSHiGG_07875

Alternate gene names: 148828051

Gene position: 1451559-1452305 (Clockwise)

Preceding gene: 148828050

Following gene: 148828052

Centisome position: 76.92

GC content: 27.44

Gene sequence:

>747_bases
ATGCCACTCATTAGTATAATAATGCCTGTTTATAATGCAGAATGTTACCTTAATCAAGGTATTTTATCTTGCTTAAATCA
ATCTTATCAAAACATTGAATTAATTTTAATTGATGATGGTTCAACAGATAAAAGTATTGAAATAATAAATAACATCATTG
ATAAAGATAAGCGGGTTAAACTTTTCTTTACCCCAACTAATCAAGGGCCTGCAGCGGCAAGAAATATAGGGTTAGAAAAA
GCACAAGGTGACTATATTACATTCTTAGATAGTGATGATTTTATTGCAAATGATAAATTAGAAAAACAACTTAATTTTAT
GTTGCAAAATCATCTTGTAATGACGCATGGCAACTATGCTTTCTGTGATTTGGAAGGAAATCAGATAAAATTAGTTACGA
CTAGTAAAAAAATTGATTATTTAACCTTATTACAAGGTAACCAATTTAAAATAATGACCATACTTGTTAAAAGAGCATCT
ATTAAATTACTTAGGTTTCCTAATATTAAACACGAAGATTATGCCTTCTTTTTGGATTGTTTAAAAGAAGTTAAACAATC
TATACTATATAGCCATCAGGCAAGTTCATTTGTAAGAATCGGTAAAGTCAGCGTTTCATCAAATAAATTTAAAAGTGCAA
TCTGGACATTTAATATCTATTTTAAAAGAGAGAAACTAGGTGTAGTAAAATCAATTTATTATTTTATCCTCTATGCCTAT
AATGGATTTATTAAATACAAGAAATAA

Upstream 100 bases:

>100_bases
TTTACGGATGTGGTTTATATTCCTTATGCTAGTGTATTGGGGGCATTGGGGATTTTACCTGTATTATATAAAATAACAAA
AAGAGTAGAAGAAAATGAAT

Downstream 100 bases:

>100_bases
AAATATGATTTCATTACTTATTATTAGCTTCGGGCGTTATCAAGAAGTATTGGAAACGTTTGCATGTGTCAATAAATATC
ATGGTAAAAAAATTGAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVKLFFTPTNQGPAAARNIGLEK
AQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTILVKRAS
IKLLRFPNIKHEDYAFFLDCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILYAY
NGFIKYKK

Sequences:

>Translated_248_residues
MPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVKLFFTPTNQGPAAARNIGLEK
AQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTILVKRAS
IKLLRFPNIKHEDYAFFLDCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILYAY
NGFIKYKK
>Mature_247_residues
PLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVKLFFTPTNQGPAAARNIGLEKA
QGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTILVKRASI
KLLRFPNIKHEDYAFFLDCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILYAYN
GFIKYKK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=157, Percent_Identity=28.6624203821656, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787259, Length=112, Percent_Identity=33.9285714285714, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788372, Length=118, Percent_Identity=35.5932203389831, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 28626; Mature: 28494

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVK
CCHHHEEHHHHCCEEEECHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEE
LFFTPTNQGPAAARNIGLEKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYA
EEEEECCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCEE
FCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTILVKRASIKLLRFPNIKHEDYAFFLDC
EEEECCCEEEEEEECCCCEEEEEEECCCEEEEEEEEEHHCEEEEECCCCCCCHHHHHHHH
LKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILYAY
HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHEE
NGFIKYKK
CCEEEECC
>Mature Secondary Structure 
PLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVK
CHHHEEHHHHCCEEEECHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEE
LFFTPTNQGPAAARNIGLEKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYA
EEEEECCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCEE
FCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTILVKRASIKLLRFPNIKHEDYAFFLDC
EEEECCCEEEEEEECCCCEEEEEEECCCEEEEEEEEEHHCEEEEECCCCCCCHHHHHHHH
LKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILYAY
HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHEE
NGFIKYKK
CCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]