Click here to switch to the map view.

The map label for this gene is rimN [H]

Identifier: 148827835

GI number: 148827835

Start: 1197431

End: 1197982

Strand: Reverse

Name: rimN [H]

Synonym: CGSHiGG_06565

Alternate gene names: 148827835

Gene position: 1197982-1197431 (Counterclockwise)

Preceding gene: 148827836

Following gene: 148827834

Centisome position: 63.48

GC content: 44.02

Gene sequence:

>552_bases
ATGAATAGAGAACAAATCGCCGATGCCCTTCGACAAAATCAAGTGGTTGCTTATCCCACTGAAGCTGTATTTGGTTTAGG
CTGTAATCCGCAAAGTGAAAGTGCGGTAAAAAAATTACTTGATTTAAAGCAACGCCCAGTGGAAAAAGGGCTGATTTTAG
TGGCGCCTAGCTTGGATTTTTTCCGTCCTTTTGTCGATTTTGAGCAGATTAACGATGAACAGCTTTCTCGCCTGCAAGGT
AAATATGAACGCCCAACGACTTGGATTGTGCCAGCTAAATCCACCACTCCGCATTTTCTCACAGGAAAATTTGATAGCAT
TGCAGTACGTTTGTGCGATCACCCATCTGTGAAAGCCTTATGTGAAATCACGGGTTTTGCATTAACTTCAACGAGTGCAA
ACCTAACAGGAGAGCCACCTTGCCGCATCGCCGATGAAGTGCGGTCACAATTCGGTGCAGATTTTCCAGTATTGGATGAA
ATGGTAGGCAGGGCGCATAATCCATCGGAAATTCGAGACTTGCGTACAAATCAACTTTTTAGACAGGGATAA

Upstream 100 bases:

>100_bases
ACTTTCTTTGTTAAAAAGCGAAAATGGGGAAAAACAAATTTTCCAGTGTGCAAATAAAACTTGCCGTCATATTTTTGAGC
AATAAAAGTAAAAGAGTGAA

Downstream 100 bases:

>100_bases
TTTATGGATCTTTATGCTGTGTGGGGCAATCCGATTGTGCAAAGTAAATCGCCATTGATTCAAAATAAGTTAGCAACGCA
AACCCATCAAACCATAGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQG
KYERPTTWIVPAKSTTPHFLTGKFDSIAVRLCDHPSVKALCEITGFALTSTSANLTGEPPCRIADEVRSQFGADFPVLDE
MVGRAHNPSEIRDLRTNQLFRQG

Sequences:

>Translated_183_residues
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQG
KYERPTTWIVPAKSTTPHFLTGKFDSIAVRLCDHPSVKALCEITGFALTSTSANLTGEPPCRIADEVRSQFGADFPVLDE
MVGRAHNPSEIRDLRTNQLFRQG
>Mature_183_residues
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQG
KYERPTTWIVPAKSTTPHFLTGKFDSIAVRLCDHPSVKALCEITGFALTSTSANLTGEPPCRIADEVRSQFGADFPVLDE
MVGRAHNPSEIRDLRTNQLFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=186, Percent_Identity=54.3010752688172, Blast_Score=207, Evalue=3e-55,
Organism=Drosophila melanogaster, GI78707274, Length=148, Percent_Identity=31.0810810810811, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20444; Mature: 20444

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDF
CCHHHHHHHHHHCCEEEECCHHHEECCCCCCHHHHHHHHHHHHHCHHHCCEEEEECCHHH
FRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAVRLCDHPSVKAL
HHHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCCEECCCHHHEEEEECCCCCHHHH
CEITGFALTSTSANLTGEPPCRIADEVRSQFGADFPVLDEMVGRAHNPSEIRDLRTNQLF
HHHHHHEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
RQG
HCC
>Mature Secondary Structure
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDF
CCHHHHHHHHHHCCEEEECCHHHEECCCCCCHHHHHHHHHHHHHCHHHCCEEEEECCHHH
FRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAVRLCDHPSVKAL
HHHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCCEECCCHHHEEEEECCCCCHHHH
CEITGFALTSTSANLTGEPPCRIADEVRSQFGADFPVLDEMVGRAHNPSEIRDLRTNQLF
HHHHHHEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
RQG
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA