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The map label for this gene is pal [H]

Identifier: 148827586

GI number: 148827586

Start: 925744

End: 926205

Strand: Reverse

Name: pal [H]

Synonym: CGSHiGG_05065

Alternate gene names: 148827586

Gene position: 926205-925744 (Counterclockwise)

Preceding gene: 148827587

Following gene: 148827552

Centisome position: 49.08

GC content: 39.83

Gene sequence:

>462_bases
ATGAACAAATTTGTTAAATCATTATTAGTTGCAGGTTCTGTAGCTGCATTAGCAGCTTGTAGTTCATCTAACAACGATGC
TGCAGGCAATGGTGTTGCTCAAACTTTTGGCGGTTACTCTGTTGCTGATCTTCAACAACGTTACAATACCGTTTATTTCG
GTTTTGATAAATATGACATTACTGGTGAATACGTTCAAATCTTAGACGCGCACGCTGCATATTTAAATGCAACGCCAGCT
GCTAAAGTATTAGTAGAAGGTAACACTGATGAACGTGGTACACCAGAATACAACATCGCATTAGGCCAACGTCGTGCAGA
TGCAGTTAAAGGTTATTTAGCTGGTAAAGGTGTTGATGCTGGTAAATTAGGCACAGTATCTTACGGTGAAGAAAAACCTG
CAGTATTAGGTCATGATGAAGCTGCATATTCTAAAAACCGTCGTGCAGTGTTAGCGTACTAA

Upstream 100 bases:

>100_bases
GTCGCTTTAAGGCGAGCCTTCCAGGAAGTGATGGTCAAGTTAAATTTCCAGCTTGGTCTCCATACTTAACTAAATAAAAA
ACTCATTTAGGAGAAATCTA

Downstream 100 bases:

>100_bases
TTCTTAGTATTTCTAATACTTGAAAAACAGGATCCATTTTTTATTGGATTCTGTTTTGTTTTCATCGTTTGTAATTTAAC
CAATTAGCTTGAACGAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGVAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPA
AKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY

Sequences:

>Translated_153_residues
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGVAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPA
AKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
>Mature_153_residues
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGVAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPA
AKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=171, Percent_Identity=53.2163742690059, Blast_Score=170, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 16136; Mature: 16136

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGVAQTFGGYSVADLQQRYNTVYFGFDKYDI
CHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHCCEEEECCCCCCC
TGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDA
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCC
GKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
CCCCCCCCCCCCCCEECCCHHHHCCCCEEEEEC
>Mature Secondary Structure
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGVAQTFGGYSVADLQQRYNTVYFGFDKYDI
CHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHCCEEEECCCCCCC
TGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDA
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCC
GKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
CCCCCCCCCCCCCCEECCCHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]