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The map label for this gene is ydcM [C]

Identifier: 148663695

GI number: 148663695

Start: 4310009

End: 4311235

Strand: Reverse

Name: ydcM [C]

Synonym: MRA_3867

Alternate gene names: 148663695

Gene position: 4311235-4310009 (Counterclockwise)

Preceding gene: 148663696

Following gene: 148663693

Centisome position: 97.54

GC content: 66.01

Gene sequence:

>1227_bases
TTGATGGCCAGATTCGAGGTGCCAGAAGGCTGGTGTGTGCAGGCGTTCCGGTTCACGCTGGACCCAACCGAGGACCAGGC
CCGCGCGCTGGCGCGGCATTTCGGCGCTCGCCGCAAGGCCTACAACTGGGCGGTCGCTACTTTGAAAGCCGATATCGAGG
CGTGGCGCGTTACTGGTATCGGGACTGTCAAGCCGTCGCTGCGGGTGCTTCGTAAACGGTGGAACACCGTCAAGGACGAG
GTGTGTGTCAACGCCGAGACCGGGGCGGTGTGGTGGCCGGAGTGCTCGAAAGAGGCTTACGCCGACGGCATTGGCGGCGC
TGTCGATGCGTACTGGAACTGGCAGAACTCCCGATCCGGTAAACGTGAGGGCAAGACAATGGGCTTCCCCCGGTTCAAGA
AGAAAGGCCGCGATCAGGACCGCGTGACATTCACGACCGGAGCGATGCGCGTCGAACCTGATCGCCGTCATCTCACACTT
CCGGTCGTCGGGACCGTCCGTACGCACGAGAACACACGCCGGATTGAACGGCTCATCGCCACAGGCCGGGCGCGGGTGCT
GGCAATCTCGGTGCGCCGTAACGGCACCCGGCTCGACGCCAGTGTGCGGGTCCTCGTGCAACGCCCGCAGCAGCCCAACG
TGGCACAGCCCGGTTCACGGGTTGGCGTTGACGTCGGGGTGCGCCGGCTGGCCACGGTCGCCAACGAGGCGGGCGCAGTG
CTCGAAGAAGTGCCCAATCCACGGCCACTCGACACGGCACTCAAAGAGCTACGGTACGCCAGCCGTGCGCGGTCGCGGTG
CACGAAAGGCTCACGGCGCTACCGCGAGCGCACCACCGAGATTTCCCGGCTGCATCGCCGGGTCAACGATGTCCGCACTC
ATCACCTGCATGTCCTGACAACACGATTGGCTCAAACCCACGGCCACATCGTTGTTGAAGGTTTGGACGCTGCGGGGATG
CTGCGGCAAAAGGGGCTTCCCGGCGCCCGCGCCCGCCGGCGCGGACTGTCGGACTCGGCCCTGGGCACTCCGCGCCGGCA
CTTGTCCTACAAGACGGGCTGGTACGGGTCGGCGCTGGTGGTCGCCGACCGCTGGTTCCCGTCGTTAAGCGTGGAGCCGA
CCGTAAGACCGGGCCTTGCCCGGCTGGTGGCTGTGAAGCGCGGAAGGGAGGCAGCCGCATGGCTGCCGAACAACCCCGAG
ACGGGGTGCAAGTCGCGTGACCACTAA

Upstream 100 bases:

>100_bases
AGATCCTGACCTCGATGTGTGCTCGGCTCTATGGTGAACGCGCTGCACAGAACGGGGCCAAGCGTGCCCTTGCTGCTGCG
GTCGGGGACGCGGAGGCAGC

Downstream 100 bases:

>100_bases
AGATCGCTCGCTTGCAACGGCTTAGCGTCCAACCGGGTGAACTCGTTGTGTCGATACAGCTTCACACACTCGGCACGTCT
GACCTTGCCGCTCGTGGTGA

Product: IS1537 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MMARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDE
VCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTL
PVVGTVRTHENTRRIERLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAV
LEEVPNPRPLDTALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGM
LRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVVADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPE
TGCKSRDH

Sequences:

>Translated_408_residues
MMARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDE
VCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTL
PVVGTVRTHENTRRIERLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAV
LEEVPNPRPLDTALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGM
LRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVVADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPE
TGCKSRDH
>Mature_408_residues
MMARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDE
VCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTL
PVVGTVRTHENTRRIERLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAV
LEEVPNPRPLDTALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGM
LRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVVADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPE
TGCKSRDH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=245, Percent_Identity=28.9795918367347, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45883; Mature: 45883

Theoretical pI: Translated: 11.75; Mature: 11.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGI
CCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEECC
GTVKPSLRVLRKRWNTVKDEVCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSG
CCCCHHHHHHHHHHCCHHHHEEECCCCCEEECCCCCHHHHHCCCCCCEEEEECCCCCCCC
KREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLPVVGTVRTHENTRRIERLIA
CCCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHH
TGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAV
CCCCEEEEEEEECCCCCCCHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LEEVPNPRPLDTALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLT
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLAQTHGHIVVEGLDAAGMLRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALV
HHHHHCCCCEEEECCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEE
VADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPETGCKSRDH
EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGI
CCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEECC
GTVKPSLRVLRKRWNTVKDEVCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSG
CCCCHHHHHHHHHHCCHHHHEEECCCCCEEECCCCCHHHHHCCCCCCEEEEECCCCCCCC
KREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLPVVGTVRTHENTRRIERLIA
CCCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHH
TGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAV
CCCCEEEEEEEECCCCCCCHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LEEVPNPRPLDTALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLT
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLAQTHGHIVVEGLDAAGMLRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALV
HHHHHCCCCEEEECCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEE
VADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPETGCKSRDH
EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]