Click here to switch to the map view.

The map label for this gene is ybaB [C]

Identifier: 148663581

GI number: 148663581

Start: 4168958

End: 4169359

Strand: Reverse

Name: ybaB [C]

Synonym: MRA_3753

Alternate gene names: 148663581

Gene position: 4169359-4168958 (Counterclockwise)

Preceding gene: 148663583

Following gene: 148663580

Centisome position: 94.33

GC content: 67.91

Gene sequence:

>402_bases
ATGCAACCCGGAGGCGACATGTCGGCGCTGCTCGCTCAGGCGCAGCAGATGCAGCAAAAGCTCCTGGAGGCCCAGCAACA
GCTGGCGAACTCTGAGGTGCACGGTCAAGCCGGTGGGGGCCTGGTCAAGGTCGTCGTCAAAGGCAGCGGGGAGGTGATCG
GCGTGACGATCGACCCCAAGGTCGTCGATCCCGACGACATCGAGACCTTGCAGGACCTGATCGTCGGTGCGATGCGCGAC
GCGTCCCAGCAGGTGACGAAGATGGCGCAGGAACGGCTGGGTGCATTGGCCGGCGCGATGCGCCCGCCGGCACCACCGGC
TGCGCCGCCGGGAGCGCCAGGTATGCCGGGTATGCCGGGTATGCCGGGTGCGCCGGGCGCACCACCTGTACCAGGGATCT
GA

Upstream 100 bases:

>100_bases
ACGGCGCAAAGGTAACGCGGCGCGGTCTAGGCTGAATGTTCCGAATCGCCCGACAACCACAGGCGAAACCAACTCGAGAC
CAAGATGCTAGGGGACTGTC

Downstream 100 bases:

>100_bases
CCTGCACCGACATGTTTGAGGGACCCGTCCAGGACCTGATTGACGAACTCGGCAAGTTGCCGGGGATCGGACCCAAGAGT
GCGCAGCGAATCGCCTTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRD
ASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMPGAPGAPPVPGI

Sequences:

>Translated_133_residues
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRD
ASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMPGAPGAPPVPGI
>Mature_133_residues
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRD
ASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMPGAPGAPPVPGI

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family

Homologues:

Organism=Escherichia coli, GI1786677, Length=99, Percent_Identity=37.3737373737374, Blast_Score=76, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3716_MYCTU (P0A654)

Other databases:

- EMBL:   BX842583
- EMBL:   AE000516
- PIR:   E70795
- RefSeq:   NP_218233.1
- RefSeq:   NP_338374.1
- ProteinModelPortal:   P0A654
- SMR:   P0A654
- EnsemblBacteria:   EBMYCT00000003786
- EnsemblBacteria:   EBMYCT00000070618
- GeneID:   885595
- GeneID:   922679
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT3819
- KEGG:   mtu:Rv3716c
- TIGR:   MT3819
- TubercuList:   Rv3716c
- GeneTree:   EBGT00050000015096
- HOGENOM:   HBG734215
- OMA:   MLQDLIL
- ProtClustDB:   PRK00153
- HAMAP:   MF_00274
- InterPro:   IPR004401
- Gene3D:   G3DSA:3.30.1310.10
- PIRSF:   PIRSF004555
- TIGRFAMs:   TIGR00103

Pfam domain/function: PF02575 DUF149; SSF82607 CHP00103

EC number: NA

Molecular weight: Translated: 13358; Mature: 13358

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
MPGAPGAPPVPGI
CCCCCCCCCCCCC
>Mature Secondary Structure
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
MPGAPGAPPVPGI
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 11681203