Click here to switch to the map view.

The map label for this gene is 148660241

Identifier: 148660241

GI number: 148660241

Start: 566331

End: 566753

Strand: Direct

Name: 148660241

Synonym: MRA_0481

Alternate gene names: NA

Gene position: 566331-566753 (Clockwise)

Preceding gene: 148660240

Following gene: 148660242

Centisome position: 12.81

GC content: 62.41

Gene sequence:

>423_bases
ATGTCGTCGGAGGAGAAGCTGGCCGCCAAGGTGTCCACCAAGGCCTCCGATGTGGCTTCCGACATCGGCAGCTTCATCAG
GTCGCAACGTGAGACGGCGCACGTCTCGATGCGGCAGCTCGCCGAGCGGTCCGGCGTCAGCAATCCGTACCTGAGCCAGG
TTGAGCGCGGATTGCGTAAGCCGTCCGCCGACGTGTTGAGCCAGATCGCAAAGGCGCTGCGGGTCTCGGCCGAAGTCCTT
TATGTGCGCGCCGGGATTCTCGAGCCCAGCGAGACCAGTCAGGTGCGTGACGCCATCATCACCGATACGGCGATCACCGA
GCGTCAGAAGCAGATTCTGCTCGATATCTACGCGTCATTTACCCACCAGAACGAAGCCACCCGGGAGGAGTGTCCGAGCG
ATCCGACACCGACCGATGACTAG

Upstream 100 bases:

>100_bases
AACTGTTGTTCTGACGGGTGCTAACAAACGCTTGCAATAGCAAGCACTTGGACGTACTCTGGTGGCCGTTGCACCGATCA
CCCCGAGCTAGGAGTAGCCA

Downstream 100 bases:

>100_bases
CCGTTGGCCGGCTGTTTTGCGCACCGGCTGGCGGGTAATCAAACCTGAAGGACAGTCATCTGGGTGAGGTCGACCGCAGG
CTGATCCAGCCGATCGGCCG

Product: PbsX family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL
YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPTPTDD

Sequences:

>Translated_140_residues
MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL
YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPTPTDD
>Mature_139_residues
SSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLY
VRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPTPTDD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y474_MYCTU (O53759)

Other databases:

- EMBL:   BX842573
- EMBL:   AE000516
- PIR:   F70829
- RefSeq:   NP_214988.1
- RefSeq:   NP_334900.1
- HSSP:   P06533
- ProteinModelPortal:   O53759
- SMR:   O53759
- EnsemblBacteria:   EBMYCT00000003175
- EnsemblBacteria:   EBMYCT00000070411
- GeneID:   886276
- GeneID:   923841
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT0491
- KEGG:   mtu:Rv0474
- TIGR:   MT0491
- TubercuList:   Rv0474
- GeneTree:   EBGT00050000015638
- HOGENOM:   HBG615603
- OMA:   QIAKGLR
- ProtClustDB:   CLSK790541
- GO:   GO:0005829
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 15364; Mature: 15233

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THQNEATREECPSDPTPTDD
HCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THQNEATREECPSDPTPTDD
HCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036