| Definition | Mycobacterium tuberculosis H37Ra, complete genome. |
|---|---|
| Accession | NC_009525 |
| Length | 4,419,977 |
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The map label for this gene is ppe54 [H]
Identifier: 148660071
GI number: 148660071
Start: 374182
End: 377073
Strand: Reverse
Name: ppe54 [H]
Synonym: MRA_0314
Alternate gene names: 148660071
Gene position: 377073-374182 (Counterclockwise)
Preceding gene: 148660073
Following gene: 148660070
Centisome position: 8.53
GC content: 62.31
Gene sequence:
>2892_bases ATGGATTTCGTGGTGTCGGCGCCCGAGGTCAATTCGTTACGGATGTATCTCGGGGCCGGATCGGGGCCGATGTTGGCGGC CGCGGCGGCCTGGGACGGACTAGCCGACGAACTGGCGGTGGCGGCGTCGTGGTTTGGGTCGGTGACCTCGGGCCTGGCGG ATGCGGCGTGGCGCGGCCCCGCGGCGGTTGCGATGGCGCGCGCGGTAGCCCCCTACCTGGGCTGGTTGATTTCGGCAACG GCCCAGGCTGAGCAGGCCGCCGCTCAGGCACGGGTAGCCGTGGCCACGTTCGAGGCGGCGCGGGCAGCGACGGTGCATCC GGCGATCGTCGCGGCCAACCGCGCCGTGCTGGTGTCGCTGGTGAGCTCGAATCTGCTGGGATTCAACGCTCCGGCGATCG CGGCCACCGAGGCCGCCTATGAGCGGATGTGGGCCCAGGATGTGGCCGCGATGGTTGGCTATCACGCTGGAGCGTCGGCG GCCGTCTCCGCGTTGATGCCGTTCACCCAGCAGCTGAAGAAGCTGGCGGGCCTATCGGAGCGGCTGACCAGCGCCGCGGC AGCCGCTGCCGGCCCCCCGAGCGCGGCGGGCTTCAATCTCGGCTTGGCAAACGTCGGCGCCAACAACGTGGGCAACGGAA ACGTCGGCGTGTTCAACGTCGGCTTCGGCAATTTGGGCAGCTACAACCTCGGCTTTGCAAACCTGGGCAGCGACAACCTG GGTTTGGCCAACCTGGGCGGCCACAACATCGGCTTTGCGAACACCGGCAGCAACAATGTCGGCTTTGGGAATACGGGCAG CAACAATGTCGGCATCGGGCTCACCGGCAACGGACAGATCGGGTTCGGCAGCTTCAACTCGGGCAGCCACAACATCGGCC TGTTCAACTCCGGCAGCGGAAACGTCGGGTTGTTCAACTCGGGCACCGGCAATTTCGGCATCGGAAACAGCGGCACCGGA AACTTCGGCCTCGGCAACACGGGCAGCACCAACACCGGCTGGTTCAACACCGGCGACGTCAACACCGGCGGCTTCAACCC GGGCAGCTACAACACCGGGAACTTCAACACCGGCAACTACAACACCGGCAGCTTCAACGCAGGTAACTACAACACCGGCT ACTTCAACACCGGCGACTACAACACTGGAGTGGCCAACACCGGCAACGTCAACACCGGCGCCTTCATCGCCGGCAACTAC AGCAACGGCGTCTTGTGGCGGGGCGACTACCAAGGCCTGATCGGTGCCGATATCGCCCTCGAGATTCCCGCCATTCCGAT AAACGCGCAGCTATTCAGCATGCCGATACATCAGGTGATGGTCATGCCCGGAAGCGTGATGACGATTCCGGGCATGCGTT TGCCCTTCACATCCATTGTTCCCTTCGTTGTTTACTACGGCCCGGTCGAGCTCCCGCAATCCACGCTCACCCTTCCCACG GTGACGATCACCGTGGGCGGACCAACCACCACGATCGACGGCAACCTCACCGGCATGGTGGGGGGCGTCAGCATCCCGCT CATCAAGATTCCGGCGGCCCCGGGCTTCGGGAACTCGACCACCAGCCCGTCGTCGGGCTTCTTCAACGCTGGCGCCGGCA CCGCCTCGGGCTTCGGCAACTTCGGCGGCGGCGCTTCGGGCTTTTGGAACCTGGCCTCGGCAACCTCGGGACTTTCGGGC TTCGGGAACGTCGGCGCGCTGGGATCGGGTGTAGCTAACGTTGGCAACACCATCTCGGGTCTCTACAACACGAGCACGTC GAATCTGGCGACGCCAGCCTTTAACTCCGGCCTGCTGCACCACAGCGTGGGCACCATGACCCTTAACTTCGGGTTGGCAA ACGTCGGCGGCAACAATGTCGGCGGTGCAAACGCCGGAATCTTCAATGTGGGCTTGGCAAACCTGGGCGACTACAATATT GGCTTCGGCAATCTAGGCGGCGACAACCTGGGCTTCGCCCACGCGGGCAGCTACAACATCGGCTTTGCGAACACCGGCAG CAATAATCTTGGCTTCGCGAACACGGGTGACAACAATATCGGTTTTGCGAATATCGGCAGCAACAATATCGGGATCGGGC TCACCGGCAGCGGCCAGATCGGGTTCGGCAGCCTGAACTCGGGCAGCCACAATATCGGCTTGTTCAACTCGGGTGACGGA AACATCGGATTGTTCAACTCGGGCAGCGGAAACTTCGGGATAGGAAACGCGGGCACCGGAAACTGGGGCATCGGAAACTC GGGCGCCGGAAACTTCGGCATCGGGAACGCGGGCAGCACCAACACGGGCTTGTTCAACTCCGGAGACCTCAACACGGGTA GCTTGAACCCGGGCAGCTATAACACCGGCAGCGTCAACACCGGCAGCGTCAACACCGGTGGCTTCAATGCAGGTAACTAC AACACCGGCTACTTCAACACCGGCGACTTACAACACCGGCATGGCGAACACCGGCAATATCAACACCGGCGCTTTCATCT CCGGCAACCACAGCAACGGCCTTCTGTGGCGGGGCGACAACCAGGGTCTGATCGACCTCGCCATCGGCGTCGACATTCCC GAAATCCCGATTGTGAGCGTCGACGTGAATATCCCGATTCACATACCGATCACCGCCAGCTTCACGGACATCGTATACAG CGGGCTCGATCTTCCACCGAACACAGCCGTCACTGTTATTTTTTTCGGACCCGTCGATATCGACCCCTTCACCGTCCCAG TGATACGGATAACCGGTCCCACACCTGTGGTCATGGTGGGTGGACCCACTACCGCGATCAATATCGGCGCCACTGTGGTC GTCGACGCCATCAACATCCCGATTATCCATATTCCAGCGACTCCAGGCTTCGGCAACTCGACCGGCGGACTGTCGTCGGG CTTCTTCAATAG
Upstream 100 bases:
>100_bases TGTCCTAGCATTTTTCACCCGTTCACGGGCTAGTCGAGTAGTAGACGATTGATTAGCCTGAACGTACCTCCGACGGCCAG CTGACGAACGGGTATGACGG
Downstream 100 bases:
>100_bases CGGCGCTGGCAGCGCCTCGGGCTTCGGCAACTTCGGGGGCGCCGCGTCGGGCTTTATGAACCTGGTCTCCACAACGTCGG GAATGTCGGGCTTCCTCAAC
Product: PPE family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 963; Mature: 963
Protein sequence:
>963_residues MDFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPAAVAMARAVAPYLGWLISAT AQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLVSSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASA AVSALMPFTQQLKKLAGLSERLTSAAAAAAGPPSAAGFNLGLANVGANNVGNGNVGVFNVGFGNLGSYNLGFANLGSDNL GLANLGGHNIGFANTGSNNVGFGNTGSNNVGIGLTGNGQIGFGSFNSGSHNIGLFNSGSGNVGLFNSGTGNFGIGNSGTG NFGLGNTGSTNTGWFNTGDVNTGGFNPGSYNTGNFNTGNYNTGSFNAGNYNTGYFNTGDYNTGVANTGNVNTGAFIAGNY SNGVLWRGDYQGLIGADIALEIPAIPINAQLFSMPIHQVMVMPGSVMTIPGMRLPFTSIVPFVVYYGPVELPQSTLTLPT VTITVGGPTTTIDGNLTGMVGGVSIPLIKIPAAPGFGNSTTSPSSGFFNAGAGTASGFGNFGGGASGFWNLASATSGLSG FGNVGALGSGVANVGNTISGLYNTSTSNLATPAFNSGLLHHSVGTMTLNFGLANVGGNNVGGANAGIFNVGLANLGDYNI GFGNLGGDNLGFAHAGSYNIGFANTGSNNLGFANTGDNNIGFANIGSNNIGIGLTGSGQIGFGSLNSGSHNIGLFNSGDG NIGLFNSGSGNFGIGNAGTGNWGIGNSGAGNFGIGNAGSTNTGLFNSGDLNTGSLNPGSYNTGSVNTGSVNTGGFNAGNY NTGYFNTGDLQHRHGEHRQYQHRRFHLRQPQQRPSVAGRQPGSDRPRHRRRHSRNPDCERRREYPDSHTDHRQLHGHRIQ RARSSTEHSRHCYFFRTRRYRPLHRPSDTDNRSHTCGHGGWTHYRDQYRRHCGRRRHQHPDYPYSSDSRLRQLDRRTVVG LLQ
Sequences:
>Translated_963_residues MDFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPAAVAMARAVAPYLGWLISAT AQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLVSSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASA AVSALMPFTQQLKKLAGLSERLTSAAAAAAGPPSAAGFNLGLANVGANNVGNGNVGVFNVGFGNLGSYNLGFANLGSDNL GLANLGGHNIGFANTGSNNVGFGNTGSNNVGIGLTGNGQIGFGSFNSGSHNIGLFNSGSGNVGLFNSGTGNFGIGNSGTG NFGLGNTGSTNTGWFNTGDVNTGGFNPGSYNTGNFNTGNYNTGSFNAGNYNTGYFNTGDYNTGVANTGNVNTGAFIAGNY SNGVLWRGDYQGLIGADIALEIPAIPINAQLFSMPIHQVMVMPGSVMTIPGMRLPFTSIVPFVVYYGPVELPQSTLTLPT VTITVGGPTTTIDGNLTGMVGGVSIPLIKIPAAPGFGNSTTSPSSGFFNAGAGTASGFGNFGGGASGFWNLASATSGLSG FGNVGALGSGVANVGNTISGLYNTSTSNLATPAFNSGLLHHSVGTMTLNFGLANVGGNNVGGANAGIFNVGLANLGDYNI GFGNLGGDNLGFAHAGSYNIGFANTGSNNLGFANTGDNNIGFANIGSNNIGIGLTGSGQIGFGSLNSGSHNIGLFNSGDG NIGLFNSGSGNFGIGNAGTGNWGIGNSGAGNFGIGNAGSTNTGLFNSGDLNTGSLNPGSYNTGSVNTGSVNTGGFNAGNY NTGYFNTGDLQHRHGEHRQYQHRRFHLRQPQQRPSVAGRQPGSDRPRHRRRHSRNPDCERRREYPDSHTDHRQLHGHRIQ RARSSTEHSRHCYFFRTRRYRPLHRPSDTDNRSHTCGHGGWTHYRDQYRRHCGRRRHQHPDYPYSSDSRLRQLDRRTVVG LLQ >Mature_963_residues MDFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPAAVAMARAVAPYLGWLISAT AQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLVSSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASA AVSALMPFTQQLKKLAGLSERLTSAAAAAAGPPSAAGFNLGLANVGANNVGNGNVGVFNVGFGNLGSYNLGFANLGSDNL GLANLGGHNIGFANTGSNNVGFGNTGSNNVGIGLTGNGQIGFGSFNSGSHNIGLFNSGSGNVGLFNSGTGNFGIGNSGTG NFGLGNTGSTNTGWFNTGDVNTGGFNPGSYNTGNFNTGNYNTGSFNAGNYNTGYFNTGDYNTGVANTGNVNTGAFIAGNY SNGVLWRGDYQGLIGADIALEIPAIPINAQLFSMPIHQVMVMPGSVMTIPGMRLPFTSIVPFVVYYGPVELPQSTLTLPT VTITVGGPTTTIDGNLTGMVGGVSIPLIKIPAAPGFGNSTTSPSSGFFNAGAGTASGFGNFGGGASGFWNLASATSGLSG FGNVGALGSGVANVGNTISGLYNTSTSNLATPAFNSGLLHHSVGTMTLNFGLANVGGNNVGGANAGIFNVGLANLGDYNI GFGNLGGDNLGFAHAGSYNIGFANTGSNNLGFANTGDNNIGFANIGSNNIGIGLTGSGQIGFGSLNSGSHNIGLFNSGDG NIGLFNSGSGNFGIGNAGTGNWGIGNSGAGNFGIGNAGSTNTGLFNSGDLNTGSLNPGSYNTGSVNTGSVNTGGFNAGNY NTGYFNTGDLQHRHGEHRQYQHRRFHLRQPQQRPSVAGRQPGSDRPRHRRRHSRNPDCERRREYPDSHTDHRQLHGHRIQ RARSSTEHSRHCYFFRTRRYRPLHRPSDTDNRSHTCGHGGWTHYRDQYRRHCGRRRHQHPDYPYSSDSRLRQLDRRTVVG LLQ
Specific function: Unknown
COG id: COG5651
COG function: function code N; PPE-repeat proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mycobacterial PPE family [H]
Homologues:
Organism=Caenorhabditis elegans, GI17556172, Length=162, Percent_Identity=28.3950617283951, Blast_Score=66, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002989 - InterPro: IPR000030 [H]
Pfam domain/function: PF01469 Pentapeptide_2; PF00823 PPE [H]
EC number: NA
Molecular weight: Translated: 98970; Mature: 98970
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGP CCEEECCCCCCCEEEEEECCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCH AAVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHCCCCHHHHHCCHHHHHHH VSSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKLAGLSE HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH RLTSAAAAAAGPPSAAGFNLGLANVGANNVGNGNVGVFNVGFGNLGSYNLGFANLGSDNL HHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCC GLANLGGHNIGFANTGSNNVGFGNTGSNNVGIGLTGNGQIGFGSFNSGSHNIGLFNSGSG CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEEECCCC NVGLFNSGTGNFGIGNSGTGNFGLGNTGSTNTGWFNTGDVNTGGFNPGSYNTGNFNTGNY CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC NTGSFNAGNYNTGYFNTGDYNTGVANTGNVNTGAFIAGNYSNGVLWRGDYQGLIGADIAL CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCEEE EIPAIPINAQLFSMPIHQVMVMPGSVMTIPGMRLPFTSIVPFVVYYGPVELPQSTLTLPT ECCCCCCCHHHHHCCHHHEEECCCCEEECCCCCCCHHHHHHHHEEECCCCCCCCEEEEEE VTITVGGPTTTIDGNLTGMVGGVSIPLIKIPAAPGFGNSTTSPSSGFFNAGAGTASGFGN EEEEECCCEEEECCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCC FGGGASGFWNLASATSGLSGFGNVGALGSGVANVGNTISGLYNTSTSNLATPAFNSGLLH CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHCCCCCCCCCCCCCCCCCEE HSVGTMTLNFGLANVGGNNVGGANAGIFNVGLANLGDYNIGFGNLGGDNLGFAHAGSYNI ECCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEE GFANTGSNNLGFANTGDNNIGFANIGSNNIGIGLTGSGQIGFGSLNSGSHNIGLFNSGDG EEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEECCCCCCCCCEEEEEECCCC NIGLFNSGSGNFGIGNAGTGNWGIGNSGAGNFGIGNAGSTNTGLFNSGDLNTGSLNPGSY CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NTGSVNTGSVNTGGFNAGNYNTGYFNTGDLQHRHGEHRQYQHRRFHLRQPQQRPSVAGRQ CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC PGSDRPRHRRRHSRNPDCERRREYPDSHTDHRQLHGHRIQRARSSTEHSRHCYFFRTRRY CCCCCCHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC RPLHRPSDTDNRSHTCGHGGWTHYRDQYRRHCGRRRHQHPDYPYSSDSRLRQLDRRTVVG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH LLQ HCC >Mature Secondary Structure MDFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGP CCEEECCCCCCCEEEEEECCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCH AAVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHCCCCHHHHHCCHHHHHHH VSSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKLAGLSE HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH RLTSAAAAAAGPPSAAGFNLGLANVGANNVGNGNVGVFNVGFGNLGSYNLGFANLGSDNL HHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCC GLANLGGHNIGFANTGSNNVGFGNTGSNNVGIGLTGNGQIGFGSFNSGSHNIGLFNSGSG CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEEECCCC NVGLFNSGTGNFGIGNSGTGNFGLGNTGSTNTGWFNTGDVNTGGFNPGSYNTGNFNTGNY CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC NTGSFNAGNYNTGYFNTGDYNTGVANTGNVNTGAFIAGNYSNGVLWRGDYQGLIGADIAL CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCEEE EIPAIPINAQLFSMPIHQVMVMPGSVMTIPGMRLPFTSIVPFVVYYGPVELPQSTLTLPT ECCCCCCCHHHHHCCHHHEEECCCCEEECCCCCCCHHHHHHHHEEECCCCCCCCEEEEEE VTITVGGPTTTIDGNLTGMVGGVSIPLIKIPAAPGFGNSTTSPSSGFFNAGAGTASGFGN EEEEECCCEEEECCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCC FGGGASGFWNLASATSGLSGFGNVGALGSGVANVGNTISGLYNTSTSNLATPAFNSGLLH CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHCCCCCCCCCCCCCCCCCEE HSVGTMTLNFGLANVGGNNVGGANAGIFNVGLANLGDYNIGFGNLGGDNLGFAHAGSYNI ECCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEE GFANTGSNNLGFANTGDNNIGFANIGSNNIGIGLTGSGQIGFGSLNSGSHNIGLFNSGDG EEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEECCCCCCCCCEEEEEECCCC NIGLFNSGSGNFGIGNAGTGNWGIGNSGAGNFGIGNAGSTNTGLFNSGDLNTGSLNPGSY CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NTGSVNTGSVNTGGFNAGNYNTGYFNTGDLQHRHGEHRQYQHRRFHLRQPQQRPSVAGRQ CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC PGSDRPRHRRRHSRNPDCERRREYPDSHTDHRQLHGHRIQRARSSTEHSRHCYFFRTRRY CCCCCCHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC RPLHRPSDTDNRSHTCGHGGWTHYRDQYRRHCGRRRHQHPDYPYSSDSRLRQLDRRTVVG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH LLQ HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]