| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is gyrA [H]
Identifier: 148652682
GI number: 148652682
Start: 1034672
End: 1037371
Strand: Direct
Name: gyrA [H]
Synonym: PsycPRwf_0873
Alternate gene names: 148652682
Gene position: 1034672-1037371 (Clockwise)
Preceding gene: 148652680
Following gene: 148652683
Centisome position: 34.73
GC content: 47.52
Gene sequence:
>2700_bases ATGAGTGATTCGGTCAGTCCCATTGCCATCGTAGATGAGATGAAGCAATCCTACCTTGATTATGCGATGAGCGTTATTGT GTCTCGAGCATTACCTGATGTGAGAGACGGGCTGAAACCTGTGCATCGCCGTATCATGTACGCCATGCATCAGCTGTCAA ACGACTACAATAAACCCTATAAAAAATCGGCCCGTGTGGTCGGTGACGTAATCGGTAAATATCACCCTCATGGTGATACT GCAGTGTATGATGCCATTGTGCGTATGGCGCAGGACTTTAGTCTTCGCTATCCTATGGTTGACGGTCAAGGTAACTTTGG TTCTATCGATGATGACCCTGCTGCAGCGATGCGTTATACCGAAGTTCGTATGACCAAGCTGACGCATCAAATGCTGGGTG ATTTGGACAAAGATACTGTCGATTGGGAAGACAACTACGACGGCTCTGAGCGTATGCCAAGCGTTCTGCCTGCTCGTATC CCGAACCTATTGGTTAACGGTGCAACCGGTATTGCGGTTGGTATGGCCACCAACATGGCGCCACACAACTTAACTGAAGT ATTAAATGCTTGCTTGGCCTATGCCGACAACCCCAATATCTCAAGTGAAGAGCTGACCAATTACATCTCTGGACCTGACT TTCCTACCGGTGGCATTATCTATGGCCGCTCAGGTATCGTTGATGCATACCGTACCGGTAAAGGCCGCTTACACATTCGT GGCCGCTATCATATTGAGCCGATGAGCGATACGGGTGTTAACCGTGATCGTGAGCGCATTGTATTTACCGAAATTCCTTA TCAGTCTAACAAAGCCAAACTGATTGAGCGCATCGCAGAATTGGTTCGTGATAAAAAGATTGAGGGTATCTCTGAGATTC GTGATGAGTCTGATAAAGACGGTATGCGTATTGCCATTGACCTGCGCCGCGGTGAAGTGGCTGAAGTTATCGTCAATAAC TTATTCTTGCAGACCCCACTTGAGTCAAGCTTTAGCATTAACATGGTGGCCTTAGATAATGGCCAGCCAAAGCTTATGAC CTTGCGTCAACTGATTGCCGCCTTCGTGCGTCACCGCCAAGAAGTGGTCACCCGCCGCACCATATTTGAATTAAATAAAG CCAAAGCCCGTGGTCATTTGTTAGAAGGTTTGACCGTAGCGCTGGCCAATATCGATGACATCATCGCGACTATCAAAGAG TCGGCCAACCGCGGTGAAGCTCGTGAGAAGCTATTGGCTCAGATTTGGGATTCAGGAACAGTTGTCGCTATGCTACAGGC AGCGGGCCGTGGCACGCTAGCGGCGGGTGACCTACGCTCAGTACGCCCTGAATACATTGAGGGTGAGGATTTAAAAAATC CGTTTGGCCTGATTGATCAAGGCAACAATTATCGTCTATCGCTTGAGCAGGTCAATGCTATCTTAGAGATGCAGCTGCAT CGTCTAACCGGTCTTGAGCAAGATAAATTAACCGAAGAGTATCAAGACTTATTGCGTCAAATCGCTGAGCTTGAATCTAT TTTGGCAGATTTTGATAAGCTGATGATGGTTATCAAAAATGAAATGCTTGAGATTTTAGAGAACTTCGGTGATGAGCGAC GTACTGATATTGTTGACTCACGTACCGACTTTAGCCGTGAAGATTTAATCCCAGAGCAAACTGTGGTATTAACCGTATCT CGTACCGGCTACGCTAAGACTCAGCCTATTAGCGATTATGTGGCACAAAAACGTGGTGGTAAGGGTAAATCTGCCACAGC GATGAAAGAAGATGATGTGATTGATCACTTAGTGGTCACCTCAACGCACGCCACGGTACTTTGCTTTACCGATAACGGCC GAGTGTTTAGCTTACGCGGCTTTGAAGTGCCGATTGCCAGCCGCGGTGCCCGTGGTCGCCCCTTAGTCAATATTATTGGG CTTGAGCCAGATGAAATTGTCACCACCATCTTGCCAATTCCGAATTTATCAGAAGAAATTGACAGCCATTTTGTGTTCTT TGCCACAGCGAACGGTACCGTTAAACGTGTCGAATTGTCACAATTTGCCAACATTCGCTCAAACGGTCTGATTGCTATTG GCCTAGAAGAGGGTGATAAGCTGGTGTCTGCACGCATTACCAACGGCGAGCAACAAGTGATGCTGTTTGCCTCAAGTGGT AAAGCCATCCGCTTTGATGAAAATGATGCCCGCGTCATGGGACGTACTGCCAAAGGCGTACGCGGTATGCGTATTGCAAA TGATGAGTTTATCAAGTCGCTGGTAGTCATCGAAGAGGATGTGCAAGAGATTTTGATTGCTTGTGAAAATGGCTATGGTA AACGTACCCCTGTTGATGAGTTTAATGCCCAAAACCGTGGCGGCGGTGGTGTGATTGCCATCAAGACCAGTGAACGTAAC GGCGCACTCGTTCGTGCCACTAAGGTTCAGCCAGAAGATGATATTATCTTAATCTCTAACAAAGGTACTTTGGTGCGTAC CCCCGTGGCTCAAGTAGCAACCTCAGGTCGTAACACGCAAGGGGTTACCTTAATCCGTTTATCTAAGGATGAAGCCTTAG TGGCCATGGCACGAGTTGAAGATACCGGTGAAGAAGATGAGCTGGTTGAAGCCATGATTGAAAATGGCTTACTGACCGGT GACGTACTTGACGCGGATAAAGACAGTGACGTTGTGGACCACTCTGATACTCTAGAGTAG
Upstream 100 bases:
>100_bases TCATAAAATTCGTGATTGCCGGGCTAAAAAACCAAGCCAAACTTCATGCTAAAAAATCACGCCCAAAAATGAGATCAGCT GCTAACATGGAGATGTATGT
Downstream 100 bases:
>100_bases TTAGCTTGAGTAACAAAACAGTGCTATGACAACCCGCTTAGAGTGTATAGAATGCCGGCATAATCTGTCGGCATTTTTTA TTTCATAATCAAGGATCGCT
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 899; Mature: 898
Protein sequence:
>899_residues MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYKKSARVVGDVIGKYHPHGDT AVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTEVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARI PNLLVNGATGIAVGMATNMAPHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIR GRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDGMRIAIDLRRGEVAEVIVNN LFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKE SANRGEAREKLLAQIWDSGTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLH RLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSRTDFSREDLIPEQTVVLTVS RTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIG LEPDEIVTTILPIPNLSEEIDSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSG KAIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERN GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTG DVLDADKDSDVVDHSDTLE
Sequences:
>Translated_899_residues MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYKKSARVVGDVIGKYHPHGDT AVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTEVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARI PNLLVNGATGIAVGMATNMAPHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIR GRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDGMRIAIDLRRGEVAEVIVNN LFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKE SANRGEAREKLLAQIWDSGTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLH RLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSRTDFSREDLIPEQTVVLTVS RTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIG LEPDEIVTTILPIPNLSEEIDSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSG KAIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERN GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTG DVLDADKDSDVVDHSDTLE >Mature_898_residues SDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYKKSARVVGDVIGKYHPHGDTA VYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTEVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIP NLLVNGATGIAVGMATNMAPHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIRG RYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDGMRIAIDLRRGEVAEVIVNNL FLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKES ANRGEAREKLLAQIWDSGTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLHR LTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSRTDFSREDLIPEQTVVLTVSR TGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGL EPDEIVTTILPIPNLSEEIDSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGK AIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERNG ALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTGD VLDADKDSDVVDHSDTLE
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Escherichia coli, GI1788562, Length=871, Percent_Identity=55.9127439724455, Blast_Score=974, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=758, Percent_Identity=33.245382585752, Blast_Score=379, Evalue=1e-106, Organism=Caenorhabditis elegans, GI212645845, Length=363, Percent_Identity=23.9669421487603, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI17136538, Length=374, Percent_Identity=26.2032085561497, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 99464; Mature: 99333
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEECCEECCCCCCCCCCCCHHHHHHHH EVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHCCHHEECCCCCEEEEHCCCCC PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIR CHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCHHCCCCCEEEEE GRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKD EEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC GMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQ CCEEEEEECCCHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH EVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC VVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLH EEEEEHHCCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH RLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDS HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC RTDFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVT CCCCCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEE STHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEI ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHEEECCCCCHHHH DSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSG CCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEECCC KAIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACENGYGKRTPVDE CEEEECCCCCCEECCHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH FNAQNRGGGGVIAIKTSERNGALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQ CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEECCHHHHHHCCCCCC GVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTGDVLDADKDSDVVDHSDTLE CEEEEEECCCCCEEEEEHHCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEECCEECCCCCCCCCCCCHHHHHHHH EVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHCCHHEECCCCCEEEEHCCCCC PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIR CHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCHHCCCCCEEEEE GRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKD EEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC GMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQ CCEEEEEECCCHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH EVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC VVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLH EEEEEHHCCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH RLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDS HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC RTDFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVT CCCCCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEE STHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEI ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHEEECCCCCHHHH DSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSG CCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEECCC KAIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACENGYGKRTPVDE CEEEECCCCCCEECCHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH FNAQNRGGGGVIAIKTSERNGALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQ CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEECCHHHHHHCCCCCC GVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTGDVLDADKDSDVVDHSDTLE CEEEEEECCCCCEEEEEHHCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7811002; 10984043 [H]