Click here to switch to the map view.

The map label for this gene is qseB [H]

Identifier: 148652503

GI number: 148652503

Start: 834675

End: 835349

Strand: Direct

Name: qseB [H]

Synonym: PsycPRwf_0692

Alternate gene names: 148652503

Gene position: 834675-835349 (Clockwise)

Preceding gene: 148652502

Following gene: 148652504

Centisome position: 28.02

GC content: 45.48

Gene sequence:

>675_bases
ATGGCACGCATATTATTGATAGAAGACGACAGCACCATCGCTGATGGTATTGTCCTTGGCTTAAAAAGTCATGGCATGAT
GGTGGATTGGTTTAGTGATGCCAAGCAAGGTGAGATTGCGCTGCAAGATGGCATGTTTGATGCGGTATTGCTGGATTTGA
CCTTGCCAAAAGGGGATGGCATGACCGTCCTAAAAAACTGGCGGGCAAAACACATAGATACGCCTGTATTGATTATCACC
GCTCGCGATGCGATTGCCAATCGTGTGGCAGGACTCAATGCAGGCGCTGATGATTATTTGGTGAAGCCGTTTGCATTAGA
TGAGGTTGTTGCTCGTCTACAAGCATTGATGAGACGCAGCCAAGGTCGGTGTCAACCTGAAGTCCGTTATGGCGAAGTGG
CCTATCAGCCTCAGAATCAGCAAGTCTCTTATCAAGGCAAAATGGTAGAATTAACCATCAAAGAAGTGGCAATCTTAGAG
CAAATGCTGACCCACCCTAAGCAAATCCACAGCCGCGCAAGCTTAGAAGACAAGCTATATGGGTGGCAACAAGATATCGA
AAGCAATGCCATTGAAGTACACATTCATCATTTACGTAAAAAACTGGGCAATGATTTTATCTTGACCAAACGCGGTATTG
GCTACTATCTCAATCCAGTCCATAACCACCATTAA

Upstream 100 bases:

>100_bases
TACTGGCAACGCCAAAACCTCATCAAATCAATGATAACGGGCAAAAAAACGGTGACAGACAAGCCGACTACTATGAAATA
AGTCAAGCGATGGAGCACAT

Downstream 100 bases:

>100_bases
CCACCGTTAGGCATTCAACGGTCTGTTTTTGGTGCCTCCACTTTGTCTGCTACTTGGTGAGCCTATGAAAAGTATTCAGC
AACGGCTATTAACATCGCTA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MARILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMTVLKNWRAKHIDTPVLIIT
ARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILE
QMLTHPKQIHSRASLEDKLYGWQQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNPVHNHH

Sequences:

>Translated_224_residues
MARILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMTVLKNWRAKHIDTPVLIIT
ARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILE
QMLTHPKQIHSRASLEDKLYGWQQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNPVHNHH
>Mature_223_residues
ARILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMTVLKNWRAKHIDTPVLIITA
RDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQ
MLTHPKQIHSRASLEDKLYGWQQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNPVHNHH

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=53.2407407407407, Blast_Score=232, Evalue=2e-62,
Organism=Escherichia coli, GI1790552, Length=215, Percent_Identity=40, Blast_Score=165, Evalue=2e-42,
Organism=Escherichia coli, GI1787375, Length=217, Percent_Identity=33.1797235023041, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI1786784, Length=220, Percent_Identity=32.7272727272727, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=33.1838565022422, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=33.1838565022422, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=31.8385650224215, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=31.5555555555556, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=35.6521739130435, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=28.3842794759825, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1786911, Length=225, Percent_Identity=29.7777777777778, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=26.5765765765766, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=28.8135593220339, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=24.6696035242291, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=30.8411214953271, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790437, Length=111, Percent_Identity=32.4324324324324, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25243; Mature: 25112

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDG
CEEEEEEECCCCHHHHEEEEECCCCEEEEECCCCCCCCEEEECCCEEEEEEEEECCCCCC
MTVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRS
CHHHHCCCHHCCCCCEEEEEECHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHH
QGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLY
CCCCCCCCEECEEEECCCCCEEEECCEEEEEHHHHHHHHHHHHHCHHHHHHHCCHHHHHH
GWQQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNPVHNHH
CHHHHHCCCEEEEHHHHHHHHHCCCEEEEECCCCEEECCCCCCC
>Mature Secondary Structure 
ARILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDG
EEEEEEECCCCHHHHEEEEECCCCEEEEECCCCCCCCEEEECCCEEEEEEEEECCCCCC
MTVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRS
CHHHHCCCHHCCCCCEEEEEECHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHH
QGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLY
CCCCCCCCEECEEEECCCCCEEEECCEEEEEHHHHHHHHHHHHHCHHHHHHHCCHHHHHH
GWQQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNPVHNHH
CHHHHHCCCEEEEHHHHHHHHHCCCEEEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]