| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is torA [H]
Identifier: 148652030
GI number: 148652030
Start: 252948
End: 255470
Strand: Direct
Name: torA [H]
Synonym: PsycPRwf_0214
Alternate gene names: 148652030
Gene position: 252948-255470 (Clockwise)
Preceding gene: 148652029
Following gene: 148652031
Centisome position: 8.49
GC content: 51.53
Gene sequence:
>2523_bases ATGAAAAATATCAATCGCAGGGGCTTTTTAAAATCGCTGGCGGCTTTGTCGGGTACGGCGCTACTCCCTACGCCGCTGTT GGCCGATGACAGCGTATTGACCTCAGCCACAGGCGACAAACCGCAAGACTTTAGTGGCTGGAAAATGTCCGGCGCACACT GGGGTGCTTTTCGTGCTCGAGTTGAGGCGGACAAGCTGGTGGAAATCAAACCGTTTGAGTTTGATCAATATCCCACTAAG ATTTTAGATGGCGTACCGGGCATTATCTACAGCCCTTCACGGGTACGCTATCCGATGATTCGCGTCGACTGGTACAAAAA CCGTCAAAACAGCGACACCTCACAGCGCGGCGACAACCGCTTTGTGCGTGTTAGCTGGGATGAGGCGTTAGACATCTTGT ATCAAGAGCTTGAGCGCATTCAAAAAGACTACGGGCCTTGGGCACTACACACCGCGAACGTGGGCTGGCGCTCGGTAGGT AACGTGCACAGCTGTGGTAACCACATGCTGCGTGCCATTGCCATGCACGGCCACAGTGTAGGGACAGCAGGGGATTACTC AACTGGTGCCGGTCAGATGATTTTGCCATATATCTTGGGCTCCACTGAGGTGTATTCGCAAGGGACGTCTTGGCCACTGA TTTTAGAAAATGCCAAAGTGATTATCTTCTGGGCCAACGACCCGATCAAAAACTTACAGGTCGGCTGGAACACTGAGACC CACGAAGCTTATGAATACTACGAGATCTTGCGTGACAAGGTTCGCAACAAAGAGATCGAAGTGATCTGTATCGATCCGGT GAAGAGCAAGACGCAAAACTACCTAGAGTGTGAGCATCAATTCGTCAATCCTATGACAGACGTGGCATTTATGCTGGGTC TGGCGCACACGTTATACACCGAGAAGCTGTATGACAAAAAGTTCATCGACATGTATGCGTTGGGGTTAGAGGAATTCACC CCTTACTTGATGGGTAAGACCGAAGACAAGGTGGAGAAGACCCCTGAGTGGGCTGAGAAAATCTGCGGCGTAAAAGCCGA TAGAATTCGCGAATTGGCACGTAAAATGGCCAAAAACCGTACTCAGCTTTGCTTTGGCTGGGCCATTCAGCGTCAGCAGC ACGGTGAGCAGCCGTATTGGATGGGGGCGATTATCGCAGCGATGCTGGGTCAAATAGGTCTGCCAGGTGGCGGTATCAGT TATTCACACCACTACAGCTCTGTGGGTGTGCCGACCTCTGGCGCCTCTATGCCAGGCGCGTTCCCACTAAACTTAGACAC TGGCCGTAAGCCTAAATATGACAATAACAATTACAATGGCTACAGCTCTGTCATTCCGGTTGCGCGTATGGTGGATTGTC TGCTTGAGCCTGGTAAGAAGATTAACTTTAATGGCCATGAAGTGACCCTACCACCGCTGAAAATGGGGATCTTTACGGGC AGTAACCAGTGGCACCGTCACCAAGATCGCAACCGCATGAAAAAAGGCTATCGCAATATGGAGACCGTGGTATCCGTTGA TTATAACTGGACCGCCACCTGCCGTTTCGCTGATATCGTATTGCCGGCCTGTACCCCTTATGAGCGTAACGACATTGACG CTTATGGCTCGTACAGTAACCGAGGCGTGATTGCGATGCACAAGCTGGTAGACCCCTTGTACCACTCTAAGTCTGACTTT GAAATCTGGTATGAGTTCACCAAGCGTATGGGCCGTGAGCTTGAGTATAGCCGGGCGATGAATGAGATACAGTGGATTGA GCAGATTTATGAGGACTGCCGTGCTGAGAACCTAAAAAAAGACTTCTTTATGCCGGAGTTCAAAGAGTTCTGGGAAAAAG GCTATGTGTTATTCCCAGAAGGGGAGAACTGGGTACGTCACGCAGACTTCCGTGAAGACCCTGAAGTCAACGCACTGGGC ACGCCATCAGGCTTTATCGAGATCAGCAGCCGCAAGATTGCCAGCTACGGTTATGCAGACTGTAAAGGTCATCCTATTTG GATGGAAAAAGCCGAGCGCTCACACGGTGGCCCAGGCTCAGATAAGTATCCGTTATGGCTACAATCGGTGCACCCAGACA CCCGCTTGCACTCACAGACCTGTGAGTCTGAGGAGCGCCGTGTTACGTATACCGTTCAAGACCGTGAACCTTGCTATATC GGCCCTGAAGATGCCAGAGCACGAGGGATTAGCGATGGTGACTTAGTCCGTGTGTTTAATGACCGAGGGCAGCTGCTTGC AGGCGCCGTCATCTCTGATAACTTCCCACCTGGCGTCATTCGTATTCAAGAAGGCGCTTGGTATGGCCCGACCGGCCCTG AAATTGGCGCCCTGGATACCTATGGAGATCCCAATACCTTGACCTTAGATATCGGGACTTCGATGTTGGCGCAGGGCCCA AGTGCCAATACCTGCTTGGTTGAGATTGAAAAATTCGTCGGCAAAGCGCCAGCGGTGACCTCCTTTGGTGGTCCCACTTA TGTCAATCCAGACGGCACGCCAGCGGCAGAAGACAAAGGCTAG
Upstream 100 bases:
>100_bases CCCCAGGCTCACCTGAGAATACGCCTCAGATGGCTCGTCCATAAGGCACCATGCGCATAATAAGACACACAAGAATAGGC AGAATAATAAGGGTTATATT
Downstream 100 bases:
>100_bases TCGCTGATATAAGCGGTTCATGCTTACAAGGGCTTTGCTTAAGCGCTAAGCAGGGCCCTTACTTTGTGGTTATGCCGCTT GTTGCGACCACCCATAACTC
Product: trimethylamine-N-oxide reductase TorA
Products: NA
Alternate protein names: TMAO reductase; Trimethylamine oxidase [H]
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MKNINRRGFLKSLAALSGTALLPTPLLADDSVLTSATGDKPQDFSGWKMSGAHWGAFRARVEADKLVEIKPFEFDQYPTK ILDGVPGIIYSPSRVRYPMIRVDWYKNRQNSDTSQRGDNRFVRVSWDEALDILYQELERIQKDYGPWALHTANVGWRSVG NVHSCGNHMLRAIAMHGHSVGTAGDYSTGAGQMILPYILGSTEVYSQGTSWPLILENAKVIIFWANDPIKNLQVGWNTET HEAYEYYEILRDKVRNKEIEVICIDPVKSKTQNYLECEHQFVNPMTDVAFMLGLAHTLYTEKLYDKKFIDMYALGLEEFT PYLMGKTEDKVEKTPEWAEKICGVKADRIRELARKMAKNRTQLCFGWAIQRQQHGEQPYWMGAIIAAMLGQIGLPGGGIS YSHHYSSVGVPTSGASMPGAFPLNLDTGRKPKYDNNNYNGYSSVIPVARMVDCLLEPGKKINFNGHEVTLPPLKMGIFTG SNQWHRHQDRNRMKKGYRNMETVVSVDYNWTATCRFADIVLPACTPYERNDIDAYGSYSNRGVIAMHKLVDPLYHSKSDF EIWYEFTKRMGRELEYSRAMNEIQWIEQIYEDCRAENLKKDFFMPEFKEFWEKGYVLFPEGENWVRHADFREDPEVNALG TPSGFIEISSRKIASYGYADCKGHPIWMEKAERSHGGPGSDKYPLWLQSVHPDTRLHSQTCESEERRVTYTVQDREPCYI GPEDARARGISDGDLVRVFNDRGQLLAGAVISDNFPPGVIRIQEGAWYGPTGPEIGALDTYGDPNTLTLDIGTSMLAQGP SANTCLVEIEKFVGKAPAVTSFGGPTYVNPDGTPAAEDKG
Sequences:
>Translated_840_residues MKNINRRGFLKSLAALSGTALLPTPLLADDSVLTSATGDKPQDFSGWKMSGAHWGAFRARVEADKLVEIKPFEFDQYPTK ILDGVPGIIYSPSRVRYPMIRVDWYKNRQNSDTSQRGDNRFVRVSWDEALDILYQELERIQKDYGPWALHTANVGWRSVG NVHSCGNHMLRAIAMHGHSVGTAGDYSTGAGQMILPYILGSTEVYSQGTSWPLILENAKVIIFWANDPIKNLQVGWNTET HEAYEYYEILRDKVRNKEIEVICIDPVKSKTQNYLECEHQFVNPMTDVAFMLGLAHTLYTEKLYDKKFIDMYALGLEEFT PYLMGKTEDKVEKTPEWAEKICGVKADRIRELARKMAKNRTQLCFGWAIQRQQHGEQPYWMGAIIAAMLGQIGLPGGGIS YSHHYSSVGVPTSGASMPGAFPLNLDTGRKPKYDNNNYNGYSSVIPVARMVDCLLEPGKKINFNGHEVTLPPLKMGIFTG SNQWHRHQDRNRMKKGYRNMETVVSVDYNWTATCRFADIVLPACTPYERNDIDAYGSYSNRGVIAMHKLVDPLYHSKSDF EIWYEFTKRMGRELEYSRAMNEIQWIEQIYEDCRAENLKKDFFMPEFKEFWEKGYVLFPEGENWVRHADFREDPEVNALG TPSGFIEISSRKIASYGYADCKGHPIWMEKAERSHGGPGSDKYPLWLQSVHPDTRLHSQTCESEERRVTYTVQDREPCYI GPEDARARGISDGDLVRVFNDRGQLLAGAVISDNFPPGVIRIQEGAWYGPTGPEIGALDTYGDPNTLTLDIGTSMLAQGP SANTCLVEIEKFVGKAPAVTSFGGPTYVNPDGTPAAEDKG >Mature_840_residues MKNINRRGFLKSLAALSGTALLPTPLLADDSVLTSATGDKPQDFSGWKMSGAHWGAFRARVEADKLVEIKPFEFDQYPTK ILDGVPGIIYSPSRVRYPMIRVDWYKNRQNSDTSQRGDNRFVRVSWDEALDILYQELERIQKDYGPWALHTANVGWRSVG NVHSCGNHMLRAIAMHGHSVGTAGDYSTGAGQMILPYILGSTEVYSQGTSWPLILENAKVIIFWANDPIKNLQVGWNTET HEAYEYYEILRDKVRNKEIEVICIDPVKSKTQNYLECEHQFVNPMTDVAFMLGLAHTLYTEKLYDKKFIDMYALGLEEFT PYLMGKTEDKVEKTPEWAEKICGVKADRIRELARKMAKNRTQLCFGWAIQRQQHGEQPYWMGAIIAAMLGQIGLPGGGIS YSHHYSSVGVPTSGASMPGAFPLNLDTGRKPKYDNNNYNGYSSVIPVARMVDCLLEPGKKINFNGHEVTLPPLKMGIFTG SNQWHRHQDRNRMKKGYRNMETVVSVDYNWTATCRFADIVLPACTPYERNDIDAYGSYSNRGVIAMHKLVDPLYHSKSDF EIWYEFTKRMGRELEYSRAMNEIQWIEQIYEDCRAENLKKDFFMPEFKEFWEKGYVLFPEGENWVRHADFREDPEVNALG TPSGFIEISSRKIASYGYADCKGHPIWMEKAERSHGGPGSDKYPLWLQSVHPDTRLHSQTCESEERRVTYTVQDREPCYI GPEDARARGISDGDLVRVFNDRGQLLAGAVISDNFPPGVIRIQEGAWYGPTGPEIGALDTYGDPNTLTLDIGTSMLAQGP SANTCLVEIEKFVGKAPAVTSFGGPTYVNPDGTPAAEDKG
Specific function: Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787231, Length=827, Percent_Identity=53.4461910519952, Blast_Score=897, Evalue=0.0, Organism=Escherichia coli, GI87081994, Length=837, Percent_Identity=37.8733572281959, Blast_Score=571, Evalue=1e-164, Organism=Escherichia coli, GI145693196, Length=794, Percent_Identity=39.0428211586902, Blast_Score=568, Evalue=1e-163, Organism=Escherichia coli, GI87081797, Length=862, Percent_Identity=29.0023201856148, Blast_Score=275, Evalue=1e-74, Organism=Escherichia coli, GI1787870, Length=768, Percent_Identity=28.515625, Blast_Score=253, Evalue=3e-68, Organism=Escherichia coli, GI171474008, Length=765, Percent_Identity=28.8888888888889, Blast_Score=246, Evalue=5e-66, Organism=Escherichia coli, GI3868721, Length=698, Percent_Identity=22.4928366762178, Blast_Score=132, Evalue=9e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 - InterPro: IPR011887 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 94897; Mature: 94897
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2 ; PS00932 MOLYBDOPTERIN_PROK_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNINRRGFLKSLAALSGTALLPTPLLADDSVLTSATGDKPQDFSGWKMSGAHWGAFRAR CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHEE VEADKLVEIKPFEFDQYPTKILDGVPGIIYSPSRVRYPMIRVDWYKNRQNSDTSQRGDNR ECCCCEEEECCCCCCCCHHHHHCCCCCCEECCCCCCCCEEEEEEECCCCCCCCHHCCCCC FVRVSWDEALDILYQELERIQKDYGPWALHTANVGWRSVGNVHSCGNHMLRAIAMHGHSV EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHCCCCC GTAGDYSTGAGQMILPYILGSTEVYSQGTSWPLILENAKVIIFWANDPIKNLQVGWNTET CCCCCCCCCCCCEEEHHHHCCCHHHCCCCCCCEEEECCEEEEEECCCCCCCCEECCCCCH HEAYEYYEILRDKVRNKEIEVICIDPVKSKTQNYLECEHQFVNPMTDVAFMLGLAHTLYT HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EKLYDKKFIDMYALGLEEFTPYLMGKTEDKVEKTPEWAEKICGVKADRIRELARKMAKNR HHHHHHHHHHHHHHCHHHHCHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCC TQLCFGWAIQRQQHGEQPYWMGAIIAAMLGQIGLPGGGISYSHHYSSVGVPTSGASMPGA CEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE FPLNLDTGRKPKYDNNNYNGYSSVIPVARMVDCLLEPGKKINFNGHEVTLPPLKMGIFTG EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCEEECCCEEEEEEEC SNQWHRHQDRNRMKKGYRNMETVVSVDYNWTATCRFADIVLPACTPYERNDIDAYGSYSN CCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC RGVIAMHKLVDPLYHSKSDFEIWYEFTKRMGRELEYSRAMNEIQWIEQIYEDCRAENLKK CCEEEHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DFFMPEFKEFWEKGYVLFPEGENWVRHADFREDPEVNALGTPSGFIEISSRKIASYGYAD HCCCHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCC CKGHPIWMEKAERSHGGPGSDKYPLWLQSVHPDTRLHSQTCESEERRVTYTVQDREPCYI CCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCEE GPEDARARGISDGDLVRVFNDRGQLLAGAVISDNFPPGVIRIQEGAWYGPTGPEIGALDT CCCHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEECCCCEECCCCCCCCCCCC YGDPNTLTLDIGTSMLAQGPSANTCLVEIEKFVGKAPAVTSFGGPTYVNPDGTPAAEDKG CCCCCEEEEECCCHHHHCCCCCCCHHEEHHHHHCCCCCEECCCCCEEECCCCCCCCCCCC >Mature Secondary Structure MKNINRRGFLKSLAALSGTALLPTPLLADDSVLTSATGDKPQDFSGWKMSGAHWGAFRAR CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHEE VEADKLVEIKPFEFDQYPTKILDGVPGIIYSPSRVRYPMIRVDWYKNRQNSDTSQRGDNR ECCCCEEEECCCCCCCCHHHHHCCCCCCEECCCCCCCCEEEEEEECCCCCCCCHHCCCCC FVRVSWDEALDILYQELERIQKDYGPWALHTANVGWRSVGNVHSCGNHMLRAIAMHGHSV EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHCCCCC GTAGDYSTGAGQMILPYILGSTEVYSQGTSWPLILENAKVIIFWANDPIKNLQVGWNTET CCCCCCCCCCCCEEEHHHHCCCHHHCCCCCCCEEEECCEEEEEECCCCCCCCEECCCCCH HEAYEYYEILRDKVRNKEIEVICIDPVKSKTQNYLECEHQFVNPMTDVAFMLGLAHTLYT HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EKLYDKKFIDMYALGLEEFTPYLMGKTEDKVEKTPEWAEKICGVKADRIRELARKMAKNR HHHHHHHHHHHHHHCHHHHCHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCC TQLCFGWAIQRQQHGEQPYWMGAIIAAMLGQIGLPGGGISYSHHYSSVGVPTSGASMPGA CEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE FPLNLDTGRKPKYDNNNYNGYSSVIPVARMVDCLLEPGKKINFNGHEVTLPPLKMGIFTG EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCEEECCCEEEEEEEC SNQWHRHQDRNRMKKGYRNMETVVSVDYNWTATCRFADIVLPACTPYERNDIDAYGSYSN CCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC RGVIAMHKLVDPLYHSKSDFEIWYEFTKRMGRELEYSRAMNEIQWIEQIYEDCRAENLKK CCEEEHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DFFMPEFKEFWEKGYVLFPEGENWVRHADFREDPEVNALGTPSGFIEISSRKIASYGYAD HCCCHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCC CKGHPIWMEKAERSHGGPGSDKYPLWLQSVHPDTRLHSQTCESEERRVTYTVQDREPCYI CCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCEE GPEDARARGISDGDLVRVFNDRGQLLAGAVISDNFPPGVIRIQEGAWYGPTGPEIGALDT CCCHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEECCCCEECCCCCCCCCCCC YGDPNTLTLDIGTSMLAQGPSANTCLVEIEKFVGKAPAVTSFGGPTYVNPDGTPAAEDKG CCCCCEEEEECCCHHHHCCCCCCCHHEEHHHHHCCCCCEECCCCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]