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The map label for this gene is ydcM [C]

Identifier: 148652011

GI number: 148652011

Start: 230778

End: 231884

Strand: Direct

Name: ydcM [C]

Synonym: PsycPRwf_0195

Alternate gene names: 148652011

Gene position: 230778-231884 (Clockwise)

Preceding gene: 148652010

Following gene: 148652012

Centisome position: 7.75

GC content: 41.19

Gene sequence:

>1107_bases
ATGAAAACCCTCAAGCTACGCATCAAAGACAAACATGCAAATCAGCTAAACAAACTAGCTGGGAGTATTAACTATGCGTG
GAACTATGTTAATGCGTTAAGCTTTGAGCATTTAAGACGCACAGGTAAGTACTTTTCGGCCTATGATTTAAGCCAATACA
CCAAAGGCAGTGGTGAGTATTTAGGCTTGCACTCGCAAACTTTGCAAGCCATCAACGAAACTTATGCCAAATCTCGTAAA
CAGTTTAAAAAAGCCAAACTTAATTGGCGAACCAACCGACCCGATGCCAAACGAAAAAGCTTAGGTTGGATACCTTTTAA
GAAATCTGCCATAAAGTACCTAAATACAAGACAAACGGGAAAGAAAACACTTAAATCAACCATACAGCTATCGCTCTGTA
AAGGTCAAAAGCTTATCATAGACGTATTCGATAGCTACAATTTGTCTTTGTATCAAATCAATACGCTTGAGATAGTGCAA
GACAGCCGTAATCGCTGGTATGCCTGTATTACCGTCAAAGATTTTCCTAGACAAGCAAGTGGTAAAGGCAGCGTTGGTAT
TGACTTAGGCTTAAAGGAGTCTGCTACCACATCAACGGGCGATAAACTACAGATTAAGCAGACTCAAAAATGGGCGAATA
AATTAGCAGTCGCCCAGCGTGCAAACAATAAAAGCCGGGTAAAGGCAATACACGCCAAGATCAAAAACTCAAGATTAGAC
GCAATACACAAATTCACTACCCAATTAGTTAAGGATAATGCTTTAATTGTGGTTGGTGATGTTAAATCACGCTCATTTAC
CAATTCGATGACCAACCTAGCTAAATCAACATACGATGCAGGATGGTTTGAACTCAAAAGACAACTAGAATATAAATGCA
AGTATGCAGGTTGTCAGCTTGAGATAGTGAATGAGAGTTACACTACCCAGACCTGCTCGTGCTGCCACAAAATAAGTGAT
AGTAGTCCAAAAGGTAGAGCAGGTCTTGGAATAAGAGGATGGAGGTGTGCTGAGTGTGGCACATGGCATGATAGAGATAT
CAATGCTGCTAAGAACATCCTTGCGGTCGGGCTTGACCGTCTAGCTGTAGCAATCCCCTCGGTTTAG

Upstream 100 bases:

>100_bases
TAAAATGACCACTTCAGTGGGTGGATATAAGGCGACACACACTGTCGTGAGTAGTATTTAAAGTATTGCAAGTTAAAATT
AACCTCGCCATACTAACCCT

Downstream 100 bases:

>100_bases
CGACGGGAAGAAGTCAAGGCTATACTGATTGATGATAATATAGTTAATCTATATACTAAATGTAATACATACTTTTAAGT
AGAAAAGGCAATCACAGTAA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKTLKLRIKDKHANQLNKLAGSINYAWNYVNALSFEHLRRTGKYFSAYDLSQYTKGSGEYLGLHSQTLQAINETYAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQTGKKTLKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPRQASGKGSVGIDLGLKESATTSTGDKLQIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEIVNESYTTQTCSCCHKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVAIPSV

Sequences:

>Translated_368_residues
MKTLKLRIKDKHANQLNKLAGSINYAWNYVNALSFEHLRRTGKYFSAYDLSQYTKGSGEYLGLHSQTLQAINETYAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQTGKKTLKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPRQASGKGSVGIDLGLKESATTSTGDKLQIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEIVNESYTTQTCSCCHKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVAIPSV
>Mature_368_residues
MKTLKLRIKDKHANQLNKLAGSINYAWNYVNALSFEHLRRTGKYFSAYDLSQYTKGSGEYLGLHSQTLQAINETYAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQTGKKTLKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPRQASGKGSVGIDLGLKESATTSTGDKLQIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEIVNESYTTQTCSCCHKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVAIPSV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=234, Percent_Identity=32.0512820512821, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41549; Mature: 41549

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLKLRIKDKHANQLNKLAGSINYAWNYVNALSFEHLRRTGKYFSAYDLSQYTKGSGEY
CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHCCCCCCE
LGLHSQTLQAINETYAKSRKQFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQTG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCHHH
KKTLKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQDSRNRWYACITVKDFPRQAS
HHHHHHHHEEEECCCCEEEEEEECCCCEEEEEECCEEEEECCCCCEEEEEEEECCCCCCC
GKGSVGIDLGLKESATTSTGDKLQIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
CCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQL
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCEEE
EIVNESYTTQTCSCCHKISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
LAVAIPSV
HHHCCCCC
>Mature Secondary Structure
MKTLKLRIKDKHANQLNKLAGSINYAWNYVNALSFEHLRRTGKYFSAYDLSQYTKGSGEY
CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHCCCCCCE
LGLHSQTLQAINETYAKSRKQFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQTG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCHHH
KKTLKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQDSRNRWYACITVKDFPRQAS
HHHHHHHHEEEECCCCEEEEEEECCCCEEEEEECCEEEEECCCCCEEEEEEEECCCCCCC
GKGSVGIDLGLKESATTSTGDKLQIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
CCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQL
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCEEE
EIVNESYTTQTCSCCHKISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
LAVAIPSV
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]