Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
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Accession | NC_009524 |
Length | 2,978,976 |
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The map label for this gene is 148651911
Identifier: 148651911
GI number: 148651911
Start: 113061
End: 114344
Strand: Direct
Name: 148651911
Synonym: PsycPRwf_0094
Alternate gene names: NA
Gene position: 113061-114344 (Clockwise)
Preceding gene: 148651902
Following gene: 148651918
Centisome position: 3.8
GC content: 41.67
Gene sequence:
>1284_bases ATGACCCTAGATACGAGACTTATTAAACGTTATCAGCAACTCGTACGCAATCACACTCACCCAAACGGTTATCTACATGC TGGTATGAAAGCAACTATGGATACTAAAAGCAGTTTTGCTCAGACCCAAGCGTTATGGCGATTTGTGCATAATGACAACA TCAGCTATCAAGAGCTTAGTAAGCCGTTACTTGAAAACAGCTTACGAGGATGTCGAGAGGACTGCAAACGCTATGGGCTA GTAATGCACGACTGGTCGCGTCTGTCACTTACGCATCACAACAAACAAGACACCTATGCGATGACACATAACTTAGATGT TGGTTATGAATTGCAATCAAGCGTTTTAGTTAGCGATATTAATGGCAGACCTATAGCAACACCTGCTCAGAACCTTGTAA CAGCCAATGGCGTTCATAGTAGTTATCAGGATACTCCTGCCAAACAAACCCATCTTAATGAATTAACCACACGCATTGAG TATTTAGAACAGCAAGGATTTGATAAACCTTTAATTCATATTATCGATAGAGAAGCTGACTCAGCCTATCAAATGCGTCA ATGGGATGAGCATGATTACAAGTTTATTACTCGAGTCAAAGCAGGCTCCTACTTAAGTTATGAGGGTAAGTCCCAGCGCT GTAGCCAGATAGCTGGGCAACTTAATTTTAGCTATCAACGACAAGTCAATTACAAAGGTAAAGCTGCTAAACAATATATC GCCACGGCGAAAGTGGTATTAACTCGCAGCGCTAAACCCCAAGCTATTGACCCTGCAACAGGTAAGCGAATAGCACCGAT TAAAGGTAAGCCCTTATCTTTACTATTAACCGTCAGTCGTATCTATGATGATCAAGATAAACGGCTAGCGACTTGGTATT TATTAAGTAACTTGCAAGAGCCGTCCGTCAATGGTGCAGATATTAGTCAGTGGTATTATTGGCGTTGGCAAATAGAATCT TATTTTAAATTGCTTAAAAGTGCAGGACTTCAGCTAGAGTCCTGGTTACAGCAAAGTGGAGACGCTTATTTTAAGCGGTT GTTAATTGCCTCTCAGGCTTGTACGCTCGTGTGGCGTATTATGCAAAAAACTGATAAACAGTCGAAAGAGTTTGCTTTGT TTTTAGTGCGCCTGTCAGGGCGACAAATGAAACGGAGCAAACCAATAACCGCACCTGCTGTGATGGCAGGATTGTTCCAG TGGCTTAATTTTAACGAACTGGTAAATCATTATTCCCCTGACAAACTACGTCAATTCGCTGATACGGCTAGTAAATTTGT GTAG
Upstream 100 bases:
>100_bases GCAGATTTTTTGACTTCCTCCCCTCCCTAAAGCATAGGTATCTACACAATTTATCAGTGAGCATAAATTTGATAAAATAG CGCAGTATGGTATAGAGAAA
Downstream 100 bases:
>100_bases ATACCTATGGCCTATGAGGGTGGTTTTACGGCGACCTTGGATAAATAGTGGCCATAAAAAAAGAGCCTCCATTGAGGCTC TTAATTTATCACAGTTTATC
Product: transposase, IS4 family protein
Products: NA
Alternate protein names: LOW QUALITY PROTEIN Transposase; Transposase IS4 Family Protein; IS4-Like Transposase
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MTLDTRLIKRYQQLVRNHTHPNGYLHAGMKATMDTKSSFAQTQALWRFVHNDNISYQELSKPLLENSLRGCREDCKRYGL VMHDWSRLSLTHHNKQDTYAMTHNLDVGYELQSSVLVSDINGRPIATPAQNLVTANGVHSSYQDTPAKQTHLNELTTRIE YLEQQGFDKPLIHIIDREADSAYQMRQWDEHDYKFITRVKAGSYLSYEGKSQRCSQIAGQLNFSYQRQVNYKGKAAKQYI ATAKVVLTRSAKPQAIDPATGKRIAPIKGKPLSLLLTVSRIYDDQDKRLATWYLLSNLQEPSVNGADISQWYYWRWQIES YFKLLKSAGLQLESWLQQSGDAYFKRLLIASQACTLVWRIMQKTDKQSKEFALFLVRLSGRQMKRSKPITAPAVMAGLFQ WLNFNELVNHYSPDKLRQFADTASKFV
Sequences:
>Translated_427_residues MTLDTRLIKRYQQLVRNHTHPNGYLHAGMKATMDTKSSFAQTQALWRFVHNDNISYQELSKPLLENSLRGCREDCKRYGL VMHDWSRLSLTHHNKQDTYAMTHNLDVGYELQSSVLVSDINGRPIATPAQNLVTANGVHSSYQDTPAKQTHLNELTTRIE YLEQQGFDKPLIHIIDREADSAYQMRQWDEHDYKFITRVKAGSYLSYEGKSQRCSQIAGQLNFSYQRQVNYKGKAAKQYI ATAKVVLTRSAKPQAIDPATGKRIAPIKGKPLSLLLTVSRIYDDQDKRLATWYLLSNLQEPSVNGADISQWYYWRWQIES YFKLLKSAGLQLESWLQQSGDAYFKRLLIASQACTLVWRIMQKTDKQSKEFALFLVRLSGRQMKRSKPITAPAVMAGLFQ WLNFNELVNHYSPDKLRQFADTASKFV >Mature_426_residues TLDTRLIKRYQQLVRNHTHPNGYLHAGMKATMDTKSSFAQTQALWRFVHNDNISYQELSKPLLENSLRGCREDCKRYGLV MHDWSRLSLTHHNKQDTYAMTHNLDVGYELQSSVLVSDINGRPIATPAQNLVTANGVHSSYQDTPAKQTHLNELTTRIEY LEQQGFDKPLIHIIDREADSAYQMRQWDEHDYKFITRVKAGSYLSYEGKSQRCSQIAGQLNFSYQRQVNYKGKAAKQYIA TAKVVLTRSAKPQAIDPATGKRIAPIKGKPLSLLLTVSRIYDDQDKRLATWYLLSNLQEPSVNGADISQWYYWRWQIESY FKLLKSAGLQLESWLQQSGDAYFKRLLIASQACTLVWRIMQKTDKQSKEFALFLVRLSGRQMKRSKPITAPAVMAGLFQW LNFNELVNHYSPDKLRQFADTASKFV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49290; Mature: 49158
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDTRLIKRYQQLVRNHTHPNGYLHAGMKATMDTKSSFAQTQALWRFVHNDNISYQELS CCCHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH KPLLENSLRGCREDCKRYGLVMHDWSRLSLTHHNKQDTYAMTHNLDVGYELQSSVLVSDI HHHHHHHHHHHHHHHHHCCCEEECCHHHEEEECCCCCCEEEEECCCCCCCHHCCEEEECC NGRPIATPAQNLVTANGVHSSYQDTPAKQTHLNELTTRIEYLEQQGFDKPLIHIIDREAD CCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC SAYQMRQWDEHDYKFITRVKAGSYLSYEGKSQRCSQIAGQLNFSYQRQVNYKGKAAKQYI HHHHHHHCCCCCHHHHHEECCCCEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHH ATAKVVLTRSAKPQAIDPATGKRIAPIKGKPLSLLLTVSRIYDDQDKRLATWYLLSNLQE HHHHHHEECCCCCCCCCCCCCCEECCCCCCCHHHHEEHHHHHCCCCCHHHHHHHHHCCCC PSVNGADISQWYYWRWQIESYFKLLKSAGLQLESWLQQSGDAYFKRLLIASQACTLVWRI CCCCCCCCCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH MQKTDKQSKEFALFLVRLSGRQMKRSKPITAPAVMAGLFQWLNFNELVNHYSPDKLRQFA HHHHCCCCHHHEEEEEECCCCHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH DTASKFV HHHHHCC >Mature Secondary Structure TLDTRLIKRYQQLVRNHTHPNGYLHAGMKATMDTKSSFAQTQALWRFVHNDNISYQELS CCHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH KPLLENSLRGCREDCKRYGLVMHDWSRLSLTHHNKQDTYAMTHNLDVGYELQSSVLVSDI HHHHHHHHHHHHHHHHHCCCEEECCHHHEEEECCCCCCEEEEECCCCCCCHHCCEEEECC NGRPIATPAQNLVTANGVHSSYQDTPAKQTHLNELTTRIEYLEQQGFDKPLIHIIDREAD CCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC SAYQMRQWDEHDYKFITRVKAGSYLSYEGKSQRCSQIAGQLNFSYQRQVNYKGKAAKQYI HHHHHHHCCCCCHHHHHEECCCCEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHH ATAKVVLTRSAKPQAIDPATGKRIAPIKGKPLSLLLTVSRIYDDQDKRLATWYLLSNLQE HHHHHHEECCCCCCCCCCCCCCEECCCCCCCHHHHEEHHHHHCCCCCHHHHHHHHHCCCC PSVNGADISQWYYWRWQIESYFKLLKSAGLQLESWLQQSGDAYFKRLLIASQACTLVWRI CCCCCCCCCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH MQKTDKQSKEFALFLVRLSGRQMKRSKPITAPAVMAGLFQWLNFNELVNHYSPDKLRQFA HHHHCCCCHHHEEEEEECCCCHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH DTASKFV HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA