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The map label for this gene is lptF [H]

Identifier: 148651871

GI number: 148651871

Start: 67680

End: 69164

Strand: Direct

Name: lptF [H]

Synonym: PsycPRwf_0054

Alternate gene names: 148651871

Gene position: 67680-69164 (Clockwise)

Preceding gene: 148651867

Following gene: 148651872

Centisome position: 2.27

GC content: 48.62

Gene sequence:

>1485_bases
ATGCAAGCTGTGCTTGATTTGGCTCATCCCTGTAATTTATCTTTCTTCAATAATTTGAGTTTGCCTGTGATTTTACGCCG
ATATATGACCCGACAAGTTGCCTCAACTACCGCCTTGGTGTTGGGGTTTTTAGTGGTTTTACTGCTAGGCGGAAGAATGA
TCCGTTACTTCGGTATTGCTGCTGAAGGGCGCTTGGATGTGGGGCTATTGTTTTCTATTATTGGCTACAACTTGCCCTAC
TTTTTAGAGCTGGTATTGCCACTGTCCTTTTTTATTGGCTTAATGTTGGTATTTGGGCGTCTGTATGTAGACCACGAAAT
GGCGGTACTCAACGGCAGTGGTATCTCACGCGGCCGTCTGGCACGATTAATTATTCCGCTGATTTTAGTGTTATTCGTGT
TAGAAGCAGGGCTGTCTCTTTATGGTAAGCCTTGGGGGGTAAAAAACTCTGAGAGTATTTGGCAGCAGCAGTCTTTAAGC
AGTGCCTTTGACCTTATTCGTCCGCAGACCTTTATCAATAGCGATGACTACCATTTGTATGTCGGCAGCATGAATGACAA
CAAAACCGAGCTGCAGGATGTGATATTAATCCAAACGGCCAAAGATGCCGCCAAATCGGTAAAGCCTGGCGCTACAGTAC
CGGAGGCGACTACCAACGCCCCTGCGGTGCGCTTAGGCCAGCAAGAGCTTGAGGGCTCAAACTCCGCCAATCAGTCCGTC
TCCTCTATTGATAAAGACAAAGCCATTACCGCCGTCACCAACCCTGTCGCTGCCTCGCAAGATAAACCGGCAGCAAAGCC
TGCAATCACGGCCGATGACGATCGCGATATTATCGTGTTGGCCAAACGCGCCGTTCAGGTCAAGGGCAGTGAAGAGAGCG
GCAAGACACAACTTGATCTGTTTCAAGGTCGACGTTATGAAGTAGGCGCAGATAGCTTGGTGTATAGCCAAATTGGTTTT
GAGCGTTATCGCATCAGTATCAATCAACCGCCTGCCGATGTTTTGACAGAAGAGAACGTGACTACCCAATCGGTACCTGC
CCTATGGAAAGCGGCCACTGGGCAAAAGGTGGCTACCAAAGCAGATGGCAGCACTGAGCCTGAGCCACAGCAAATCTTAT
CCGCCCAAGCAGAATTGGGCTACCGTTTGGCACTGCCTTGGCTCATTATTCTAGCGCCTATGCTGGCTGTGCCCCTAGCT
CAGGTAAAACCGAGACAAGGGCGCTGGCTGCGACTGTTGCCGGCAATTTTGATATTTACCAGCTGCGTGTTGGTGATTAT
TTCTCTTAAAAACGCCATTACCAAGGGCACCTTGTCTGTGCTGAGTTATCCGCTGGTATTAATTGGCTTTATTGTGTTGG
CACTTTATCTTAACTGGGCCAGTCGTATCCATCACAGGGTACGCTTTAGACTCGGCCAACGGGCACTACAAAGTCAGACA
AATCATTCTTCTAATCCTGATATCAATCAAGGAGGCCGGTCATGA

Upstream 100 bases:

>100_bases
GGGACTGATTTCTAAAAGATAAGCGAACACAGCTTTGCTGTATAGCCTATGTAATCAAGCGGTATTGAGCCCTGGAATAT
AGCTATCATGTCAGTACTTG

Downstream 100 bases:

>100_bases
AACCTAGGCATACTGACCACTCCGATGCGTCAAAAGACATTCGCTCAGGCCGGATTATCTCGCGCTATGTCAAAAAAAAC
GCCCTGTTTGCCATGCTATT

Product: permease YjgP/YjgQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MQAVLDLAHPCNLSFFNNLSLPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIAAEGRLDVGLLFSIIGYNLPY
FLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLSLYGKPWGVKNSESIWQQQSLS
SAFDLIRPQTFINSDDYHLYVGSMNDNKTELQDVILIQTAKDAAKSVKPGATVPEATTNAPAVRLGQQELEGSNSANQSV
SSIDKDKAITAVTNPVAASQDKPAAKPAITADDDRDIIVLAKRAVQVKGSEESGKTQLDLFQGRRYEVGADSLVYSQIGF
ERYRISINQPPADVLTEENVTTQSVPALWKAATGQKVATKADGSTEPEPQQILSAQAELGYRLALPWLIILAPMLAVPLA
QVKPRQGRWLRLLPAILIFTSCVLVIISLKNAITKGTLSVLSYPLVLIGFIVLALYLNWASRIHHRVRFRLGQRALQSQT
NHSSNPDINQGGRS

Sequences:

>Translated_494_residues
MQAVLDLAHPCNLSFFNNLSLPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIAAEGRLDVGLLFSIIGYNLPY
FLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLSLYGKPWGVKNSESIWQQQSLS
SAFDLIRPQTFINSDDYHLYVGSMNDNKTELQDVILIQTAKDAAKSVKPGATVPEATTNAPAVRLGQQELEGSNSANQSV
SSIDKDKAITAVTNPVAASQDKPAAKPAITADDDRDIIVLAKRAVQVKGSEESGKTQLDLFQGRRYEVGADSLVYSQIGF
ERYRISINQPPADVLTEENVTTQSVPALWKAATGQKVATKADGSTEPEPQQILSAQAELGYRLALPWLIILAPMLAVPLA
QVKPRQGRWLRLLPAILIFTSCVLVIISLKNAITKGTLSVLSYPLVLIGFIVLALYLNWASRIHHRVRFRLGQRALQSQT
NHSSNPDINQGGRS
>Mature_494_residues
MQAVLDLAHPCNLSFFNNLSLPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIAAEGRLDVGLLFSIIGYNLPY
FLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLSLYGKPWGVKNSESIWQQQSLS
SAFDLIRPQTFINSDDYHLYVGSMNDNKTELQDVILIQTAKDAAKSVKPGATVPEATTNAPAVRLGQQELEGSNSANQSV
SSIDKDKAITAVTNPVAASQDKPAAKPAITADDDRDIIVLAKRAVQVKGSEESGKTQLDLFQGRRYEVGADSLVYSQIGF
ERYRISINQPPADVLTEENVTTQSVPALWKAATGQKVATKADGSTEPEPQQILSAQAELGYRLALPWLIILAPMLAVPLA
QVKPRQGRWLRLLPAILIFTSCVLVIISLKNAITKGTLSVLSYPLVLIGFIVLALYLNWASRIHHRVRFRLGQRALQSQT
NHSSNPDINQGGRS

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 54113; Mature: 54113

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVLDLAHPCNLSFFNNLSLPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIA
CCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
AEGRLDVGLLFSIIGYNLPYFLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRL
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
ARLIIPLILVLFVLEAGLSLYGKPWGVKNSESIWQQQSLSSAFDLIRPQTFINSDDYHLY
HHHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEE
VGSMNDNKTELQDVILIQTAKDAAKSVKPGATVPEATTNAPAVRLGQQELEGSNSANQSV
EECCCCCHHHHHHHHEEEEHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCCHHHH
SSIDKDKAITAVTNPVAASQDKPAAKPAITADDDRDIIVLAKRAVQVKGSEESGKTQLDL
HHHHHHCCEEHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCCCCCHHHH
FQGRRYEVGADSLVYSQIGFERYRISINQPPADVLTEENVTTQSVPALWKAATGQKVATK
HCCCCEECCCHHHHHHHHCCEEEEEEECCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEC
ADGSTEPEPQQILSAQAELGYRLALPWLIILAPMLAVPLAQVKPRQGRWLRLLPAILIFT
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHH
SCVLVIISLKNAITKGTLSVLSYPLVLIGFIVLALYLNWASRIHHRVRFRLGQRALQSQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NHSSNPDINQGGRS
CCCCCCCCCCCCCC
>Mature Secondary Structure
MQAVLDLAHPCNLSFFNNLSLPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIA
CCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
AEGRLDVGLLFSIIGYNLPYFLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRL
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
ARLIIPLILVLFVLEAGLSLYGKPWGVKNSESIWQQQSLSSAFDLIRPQTFINSDDYHLY
HHHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEE
VGSMNDNKTELQDVILIQTAKDAAKSVKPGATVPEATTNAPAVRLGQQELEGSNSANQSV
EECCCCCHHHHHHHHEEEEHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCCHHHH
SSIDKDKAITAVTNPVAASQDKPAAKPAITADDDRDIIVLAKRAVQVKGSEESGKTQLDL
HHHHHHCCEEHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCCCCCHHHH
FQGRRYEVGADSLVYSQIGFERYRISINQPPADVLTEENVTTQSVPALWKAATGQKVATK
HCCCCEECCCHHHHHHHHCCEEEEEEECCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEC
ADGSTEPEPQQILSAQAELGYRLALPWLIILAPMLAVPLAQVKPRQGRWLRLLPAILIFT
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHH
SCVLVIISLKNAITKGTLSVLSYPLVLIGFIVLALYLNWASRIHHRVRFRLGQRALQSQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NHSSNPDINQGGRS
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]