Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
---|---|
Accession | NC_009507 |
Length | 310,228 |
Click here to switch to the map view.
The map label for this gene is 148550799
Identifier: 148550799
GI number: 148550799
Start: 271314
End: 271826
Strand: Reverse
Name: 148550799
Synonym: Swit_5363
Alternate gene names: NA
Gene position: 271826-271314 (Counterclockwise)
Preceding gene: 148550823
Following gene: 148550798
Centisome position: 87.62
GC content: 61.21
Gene sequence:
>513_bases GTGGGGCAGGGTTACAAAACGTCACAGGGACAGGACGCGGCGGGAGTGGGTTTCCCCCGACAGGTCAGCATCGATATTTC CGAGCACTTTTTCCGCCTCACCACCGAAAGCGTGCGGCTGCGCTCGAACGAAACCCATTCATACCAGACGCTGGCGACCC TGGTGAATGCGCGCGCCGCCTCCGCCGCGGCCATGGATCATGATTCCGAGGTGCTTCGCTCGCATCTCGACAAGATCCCC ACCGAAGGCGGCATTCGGATCAAACTGCGCGTGACCGCGAGCAGCGCCGAGAACCTCAGCGAGGCCCAGCATATTCTGGC CAGGCAACTCGGGCAGGGCATGTCCGCCGGCGACATGCTGTCGCTTCTCCTGTTCGACTATATCGTCGAGCAGAAGGCGA AGGCCGTCGTGGCGAAGCTGCGCGAACAGGGGCTCGATTTACCACCTGCCAAGACCGCCGGAAAAATTGCGACCGATTCG CAACAGACAAGTCCATCCGTTCCAATGGCTTAG
Upstream 100 bases:
>100_bases TTGCGATAAGATTGGTTAACGGTTAAGTTCCACCGTGGATTCGGCAGGTGGTTCGTGCCGCGTAGCAAGGACGCGGGATC CGGCACTCCAGGGGGGTCGA
Downstream 100 bases:
>100_bases CCGATACCTGTAAAGAAATTCAGGTCAGAGGTTGTTGCAAAGCGTTTCCCGCTGTGATTTGGTGCTCTTACGGAGCAGGA TCAGGGGGCCGGTTCATGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MGQGYKTSQGQDAAGVGFPRQVSIDISEHFFRLTTESVRLRSNETHSYQTLATLVNARAASAAAMDHDSEVLRSHLDKIP TEGGIRIKLRVTASSAENLSEAQHILARQLGQGMSAGDMLSLLLFDYIVEQKAKAVVAKLREQGLDLPPAKTAGKIATDS QQTSPSVPMA
Sequences:
>Translated_170_residues MGQGYKTSQGQDAAGVGFPRQVSIDISEHFFRLTTESVRLRSNETHSYQTLATLVNARAASAAAMDHDSEVLRSHLDKIP TEGGIRIKLRVTASSAENLSEAQHILARQLGQGMSAGDMLSLLLFDYIVEQKAKAVVAKLREQGLDLPPAKTAGKIATDS QQTSPSVPMA >Mature_169_residues GQGYKTSQGQDAAGVGFPRQVSIDISEHFFRLTTESVRLRSNETHSYQTLATLVNARAASAAAMDHDSEVLRSHLDKIPT EGGIRIKLRVTASSAENLSEAQHILARQLGQGMSAGDMLSLLLFDYIVEQKAKAVVAKLREQGLDLPPAKTAGKIATDSQ QTSPSVPMA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18276; Mature: 18145
Theoretical pI: Translated: 7.90; Mature: 7.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQGYKTSQGQDAAGVGFPRQVSIDISEHFFRLTTESVRLRSNETHSYQTLATLVNARAA CCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH SAAAMDHDSEVLRSHLDKIPTEGGIRIKLRVTASSAENLSEAQHILARQLGQGMSAGDML HHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHH SLLLFDYIVEQKAKAVVAKLREQGLDLPPAKTAGKIATDSQQTSPSVPMA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GQGYKTSQGQDAAGVGFPRQVSIDISEHFFRLTTESVRLRSNETHSYQTLATLVNARAA CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH SAAAMDHDSEVLRSHLDKIPTEGGIRIKLRVTASSAENLSEAQHILARQLGQGMSAGDML HHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHH SLLLFDYIVEQKAKAVVAKLREQGLDLPPAKTAGKIATDSQQTSPSVPMA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA