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The map label for this gene is yjbJ [H]

Identifier: 148550797

GI number: 148550797

Start: 269613

End: 270614

Strand: Direct

Name: yjbJ [H]

Synonym: Swit_5361

Alternate gene names: 148550797

Gene position: 269613-270614 (Clockwise)

Preceding gene: 148550795

Following gene: 148550800

Centisome position: 86.91

GC content: 68.06

Gene sequence:

>1002_bases
ATGAAGACCGCGCTCCTTGCTGCACCGCTGCTCACCATCATCCTTGCAGCCCCGCTTGCCGCCGCCAGCCCGCAAGGTTC
GCCGCGCACCGTTCAACTCATCACCATGGGCGTGCCCGCGCCGCCACGCCTGTCGGCCGCTGCGGGCACAGATGGCGCAC
ACGGCCCGGAAAGGCCGGCGGTAGACGAAGGCGCCCCACCCGCCGCAGGCAGTCCGGCCGCGCTTCCAGCGTCGTTTAGC
GTTCATGACCTCAGCCGCAAATGGGTGCAGTTCCAGATGGCGCAGACTTATGGGCAAGCGGCCGTGGCCCCCGGCGAGAC
CGCGCCGGTCGACGTGGCGGCTACCGGGGCTGCGCTGCCAGTTGCGGCCGCGCCCGGCGTCTTTGCCGAGCCGACGCTGG
AGCCGATACCCGTTCCTGCGTGGATGCGCGGCGGACTGGCCTTTGCCAGCGCCGCAACCCGCTACAAGCCGGGGTGCTAC
GCCGCAGGCTATCGGCCAGCCGGCTTTCTCAGTGCGCAGGCGGAGATCCGCCGGGCGGGCTATTACGGGATGATGAGCGC
GATCGCGTGCCAATATGGCCTCCCGGTCGGCCTTTTCGACGCCATGATCATCCGGGAGAGCCGCTACAATGACCGGGCCG
TTTCGCCGAAAAATGCCTATGGATTGACGCAGCTCATGCCCGGCACGGCCGCGGGGTTGGGCGTGGATCGCTACGATATC
GAGCAGAATCTGCACGGCGGCGCGCGCTATCTGCGCAGCCAGCTCGATCGCTTTGGCCAGGTCCATCTGGCCTTGGCGGC
TTATAATGCCGGGCCGGGCCGGGTGCGGGGCGGCCAGGTGCCGCGCATCGCCGAGACCCAGGCCTATGTCGACGACATTC
TCCTCAACTGGCGGCGTCTGAGTGGTTTCACGCGGACGGCCAATGTCACCGGCCGATCGTTGCCGCCGACTCCCACATCT
CCGCGTTTCAATGGACGCAGCGCGGTCGTCTCGCGCTTCTGA

Upstream 100 bases:

>100_bases
TTCTGGAGCGCAATGGGCAAAGTCTGACCAGGCGCCGAGGGATTGACAACGGGATTTGGGTTCACCTCCACTCGGGCAAG
GACAGGTTTCGGGAGGTTTT

Downstream 100 bases:

>100_bases
GGCGAGACCCGAGGCATCGGACGCCGGTGCGATCCCCACGGACGGTGTCCGACGGTCAGTCCAGACGGAAGCTCTGCTCC
ATGCGGGCGCGCCGCTCGAT

Product: lytic transglycosylase, catalytic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKTALLAAPLLTIILAAPLAAASPQGSPRTVQLITMGVPAPPRLSAAAGTDGAHGPERPAVDEGAPPAAGSPAALPASFS
VHDLSRKWVQFQMAQTYGQAAVAPGETAPVDVAATGAALPVAAAPGVFAEPTLEPIPVPAWMRGGLAFASAATRYKPGCY
AAGYRPAGFLSAQAEIRRAGYYGMMSAIACQYGLPVGLFDAMIIRESRYNDRAVSPKNAYGLTQLMPGTAAGLGVDRYDI
EQNLHGGARYLRSQLDRFGQVHLALAAYNAGPGRVRGGQVPRIAETQAYVDDILLNWRRLSGFTRTANVTGRSLPPTPTS
PRFNGRSAVVSRF

Sequences:

>Translated_333_residues
MKTALLAAPLLTIILAAPLAAASPQGSPRTVQLITMGVPAPPRLSAAAGTDGAHGPERPAVDEGAPPAAGSPAALPASFS
VHDLSRKWVQFQMAQTYGQAAVAPGETAPVDVAATGAALPVAAAPGVFAEPTLEPIPVPAWMRGGLAFASAATRYKPGCY
AAGYRPAGFLSAQAEIRRAGYYGMMSAIACQYGLPVGLFDAMIIRESRYNDRAVSPKNAYGLTQLMPGTAAGLGVDRYDI
EQNLHGGARYLRSQLDRFGQVHLALAAYNAGPGRVRGGQVPRIAETQAYVDDILLNWRRLSGFTRTANVTGRSLPPTPTS
PRFNGRSAVVSRF
>Mature_333_residues
MKTALLAAPLLTIILAAPLAAASPQGSPRTVQLITMGVPAPPRLSAAAGTDGAHGPERPAVDEGAPPAAGSPAALPASFS
VHDLSRKWVQFQMAQTYGQAAVAPGETAPVDVAATGAALPVAAAPGVFAEPTLEPIPVPAWMRGGLAFASAATRYKPGCY
AAGYRPAGFLSAQAEIRRAGYYGMMSAIACQYGLPVGLFDAMIIRESRYNDRAVSPKNAYGLTQLMPGTAAGLGVDRYDI
EQNLHGGARYLRSQLDRFGQVHLALAAYNAGPGRVRGGQVPRIAETQAYVDDILLNWRRLSGFTRTANVTGRSLPPTPTS
PRFNGRSAVVSRF

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 34763; Mature: 34763

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALLAAPLLTIILAAPLAAASPQGSPRTVQLITMGVPAPPRLSAAAGTDGAHGPERPA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
VDEGAPPAAGSPAALPASFSVHDLSRKWVQFQMAQTYGQAAVAPGETAPVDVAATGAALP
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCC
VAAAPGVFAEPTLEPIPVPAWMRGGLAFASAATRYKPGCYAAGYRPAGFLSAQAEIRRAG
HHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHH
YYGMMSAIACQYGLPVGLFDAMIIRESRYNDRAVSPKNAYGLTQLMPGTAAGLGVDRYDI
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHCCCCCHHHH
EQNLHGGARYLRSQLDRFGQVHLALAAYNAGPGRVRGGQVPRIAETQAYVDDILLNWRRL
HHCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SGFTRTANVTGRSLPPTPTSPRFNGRSAVVSRF
CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MKTALLAAPLLTIILAAPLAAASPQGSPRTVQLITMGVPAPPRLSAAAGTDGAHGPERPA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
VDEGAPPAAGSPAALPASFSVHDLSRKWVQFQMAQTYGQAAVAPGETAPVDVAATGAALP
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCC
VAAAPGVFAEPTLEPIPVPAWMRGGLAFASAATRYKPGCYAAGYRPAGFLSAQAEIRRAG
HHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHH
YYGMMSAIACQYGLPVGLFDAMIIRESRYNDRAVSPKNAYGLTQLMPGTAAGLGVDRYDI
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHCCCCCHHHH
EQNLHGGARYLRSQLDRFGQVHLALAAYNAGPGRVRGGQVPRIAETQAYVDDILLNWRRL
HHCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SGFTRTANVTGRSLPPTPTSPRFNGRSAVVSRF
CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]