Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550796
Identifier: 148550796
GI number: 148550796
Start: 268207
End: 269502
Strand: Reverse
Name: 148550796
Synonym: Swit_5360
Alternate gene names: NA
Gene position: 269502-268207 (Counterclockwise)
Preceding gene: 148550798
Following gene: 148550794
Centisome position: 86.87
GC content: 66.13
Gene sequence:
>1296_bases ATGTGGCTGATCGACCGACAGGGCGACGGACAAAAAGGTCGTCGCATCCCCCTTCCCGACCTCGTGCGGTCCGCACTGGT GCGCTGGTATATGGGCGAAGGCTCGCGCGGCGATGAAGAGGCGGGGATCGCGCTTGTCCAGCAAGCCCGGATCGGCGCCA AGTGGATCGCATGCGACTGCCTGGGTCCCGACACCCGGCCGCCGGTCCTGACCCCTGCCTTTCTGTCGGAAGCTGAAACC TATTATCTGCGGCGGCTGACGGGCGCCGACCGGCCCGAGCATCGTCCCCAATGCCCCTTCTTCCGCGAGCAGGCGACCAA TCGCTTTTCGGAGATCCGCACGCCCCATTCGCCGGCCGATCCTCCGGAAGGCTATTTCGAAGTGCTGCGGCCAGCCCCTG AGAAGCTCGCGCAAAAGCCGCAGGCCGACAGTATCGACGACAGGACGCGCAATGCGACGGTGCCGCGTCTCGCCCGCCTT CTCTGGCGTCTTATGACCCTGGCCGGTGTCCATCGCACGCCGCCGGTTGGAGCGGAGCCGCCCGAACGCTCCATTGCGCA AGAATTCAGGGCCCTGAGCGCGGCGGCCGCGCGGATCGAGCTTGCACCCGGCATCGAGCTCGGCCGCGCCTTATGGACAC ACGCCCGTCCCTTTCACAACAATCGCGTGTTCGCAGGCCTGCGCGCGCTATCCCATCAGTGGCCACCGGGTCACGCGCCG CAGGCCTTCCTCGCGCTCTACGCAACAGCGGTGCAGGGTGCGACCATCCATGTCGCGGGCGCCGAGCCACTGATGCTCGC CAATCGGGTGCAGTCACCATCAATCCGCGGCAACCCGATCAAAGGTCCTTACCTGGTGCTGGTCGTGGTCGGCGAATATC CCGAGGCCGACGGTTATGCGGCGCTGCGGGCCTATGCGCAGCCCATCGTCTCGGGCCGGCGTTTCGTGCCGGTTGCCTCC GAATTCGAGCGTTCTCTCTTTCGCGGCCTGCTCGACGCGCGATGCGCGCTCGATCGCCTCGGCATAGACCTGGTGATCGA AAAGCCGCTCTTCGACCAGTTGACCCCGCAAGGCCCCTGTCGGCCCGACTTCCTGCTTGAAGCGCAGTCGAGGGAGACCG GCGAAATCCGGCAGCTGGTCGTTGCGGCGCAGAGCGCGCTCGACGAGGACCATCTGGCAGTGAAAGCCGCCATCTATCCG CGCCTCGAGATGATCGCGCCGCTCATTACTCTCGGGCCCGATGCGCTCGAGCGGGGTGCCATACCGGATATCGTACGAAC CGCCCTAGGCGTATGA
Upstream 100 bases:
>100_bases GAAACCTGTCCTTGCCCGAGTGGAGGTGAACCCAAATCCCGTTGTCAATCCCTCGGCGCCTGGTCAGACTTTGCCCATTG CGCTCCAGAAGGGCTCCTCC
Downstream 100 bases:
>100_bases GACGGGCGCATCAGGTAATAGTGATCCGGTGAGCGCCCCGCCCCTGCTCAGGACCAGCGGAGCGTCGCGGCAAACCATGC CACGATGCCCAAGGTGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MWLIDRQGDGQKGRRIPLPDLVRSALVRWYMGEGSRGDEEAGIALVQQARIGAKWIACDCLGPDTRPPVLTPAFLSEAET YYLRRLTGADRPEHRPQCPFFREQATNRFSEIRTPHSPADPPEGYFEVLRPAPEKLAQKPQADSIDDRTRNATVPRLARL LWRLMTLAGVHRTPPVGAEPPERSIAQEFRALSAAAARIELAPGIELGRALWTHARPFHNNRVFAGLRALSHQWPPGHAP QAFLALYATAVQGATIHVAGAEPLMLANRVQSPSIRGNPIKGPYLVLVVVGEYPEADGYAALRAYAQPIVSGRRFVPVAS EFERSLFRGLLDARCALDRLGIDLVIEKPLFDQLTPQGPCRPDFLLEAQSRETGEIRQLVVAAQSALDEDHLAVKAAIYP RLEMIAPLITLGPDALERGAIPDIVRTALGV
Sequences:
>Translated_431_residues MWLIDRQGDGQKGRRIPLPDLVRSALVRWYMGEGSRGDEEAGIALVQQARIGAKWIACDCLGPDTRPPVLTPAFLSEAET YYLRRLTGADRPEHRPQCPFFREQATNRFSEIRTPHSPADPPEGYFEVLRPAPEKLAQKPQADSIDDRTRNATVPRLARL LWRLMTLAGVHRTPPVGAEPPERSIAQEFRALSAAAARIELAPGIELGRALWTHARPFHNNRVFAGLRALSHQWPPGHAP QAFLALYATAVQGATIHVAGAEPLMLANRVQSPSIRGNPIKGPYLVLVVVGEYPEADGYAALRAYAQPIVSGRRFVPVAS EFERSLFRGLLDARCALDRLGIDLVIEKPLFDQLTPQGPCRPDFLLEAQSRETGEIRQLVVAAQSALDEDHLAVKAAIYP RLEMIAPLITLGPDALERGAIPDIVRTALGV >Mature_431_residues MWLIDRQGDGQKGRRIPLPDLVRSALVRWYMGEGSRGDEEAGIALVQQARIGAKWIACDCLGPDTRPPVLTPAFLSEAET YYLRRLTGADRPEHRPQCPFFREQATNRFSEIRTPHSPADPPEGYFEVLRPAPEKLAQKPQADSIDDRTRNATVPRLARL LWRLMTLAGVHRTPPVGAEPPERSIAQEFRALSAAAARIELAPGIELGRALWTHARPFHNNRVFAGLRALSHQWPPGHAP QAFLALYATAVQGATIHVAGAEPLMLANRVQSPSIRGNPIKGPYLVLVVVGEYPEADGYAALRAYAQPIVSGRRFVPVAS EFERSLFRGLLDARCALDRLGIDLVIEKPLFDQLTPQGPCRPDFLLEAQSRETGEIRQLVVAAQSALDEDHLAVKAAIYP RLEMIAPLITLGPDALERGAIPDIVRTALGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47468; Mature: 47468
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWLIDRQGDGQKGRRIPLPDLVRSALVRWYMGEGSRGDEEAGIALVQQARIGAKWIACDC CCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC LGPDTRPPVLTPAFLSEAETYYLRRLTGADRPEHRPQCPFFREQATNRFSEIRTPHSPAD CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC PPEGYFEVLRPAPEKLAQKPQADSIDDRTRNATVPRLARLLWRLMTLAGVHRTPPVGAEP CCHHHHHHHCCCHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC PERSIAQEFRALSAAAARIELAPGIELGRALWTHARPFHNNRVFAGLRALSHQWPPGHAP CHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCH QAFLALYATAVQGATIHVAGAEPLMLANRVQSPSIRGNPIKGPYLVLVVVGEYPEADGYA HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCHH ALRAYAQPIVSGRRFVPVASEFERSLFRGLLDARCALDRLGIDLVIEKPLFDQLTPQGPC HHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCC RPDFLLEAQSRETGEIRQLVVAAQSALDEDHLAVKAAIYPRLEMIAPLITLGPDALERGA CCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHHHHHHHHCCHHHHHHCC IPDIVRTALGV CHHHHHHHHCC >Mature Secondary Structure MWLIDRQGDGQKGRRIPLPDLVRSALVRWYMGEGSRGDEEAGIALVQQARIGAKWIACDC CCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC LGPDTRPPVLTPAFLSEAETYYLRRLTGADRPEHRPQCPFFREQATNRFSEIRTPHSPAD CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC PPEGYFEVLRPAPEKLAQKPQADSIDDRTRNATVPRLARLLWRLMTLAGVHRTPPVGAEP CCHHHHHHHCCCHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC PERSIAQEFRALSAAAARIELAPGIELGRALWTHARPFHNNRVFAGLRALSHQWPPGHAP CHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCH QAFLALYATAVQGATIHVAGAEPLMLANRVQSPSIRGNPIKGPYLVLVVVGEYPEADGYA HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCHH ALRAYAQPIVSGRRFVPVASEFERSLFRGLLDARCALDRLGIDLVIEKPLFDQLTPQGPC HHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCC RPDFLLEAQSRETGEIRQLVVAAQSALDEDHLAVKAAIYPRLEMIAPLITLGPDALERGA CCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHHHHHHHHCCHHHHHHCC IPDIVRTALGV CHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA