Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550628
Identifier: 148550628
GI number: 148550628
Start: 78621
End: 79325
Strand: Reverse
Name: 148550628
Synonym: Swit_5189
Alternate gene names: NA
Gene position: 79325-78621 (Counterclockwise)
Preceding gene: 148550630
Following gene: 148550627
Centisome position: 25.57
GC content: 61.13
Gene sequence:
>705_bases ATGACCGACACCACTTCGTCGGGCGCGCCCGCGCGCCTCTATAGCCAGACCCCATATGACGATCGAGGCAACTTCCATTA TCAGGGCGATCTCTATCGTCCCAGTGATAATCTTGCGACCCTCGCTGGCCGCATCGAACCGCATCTGGCGCGGTGCTTTC CGAACGCGTCCTTTGCGATCCAGACCCAGAAATTCGCGGGAGGACGCAAGATCACCGCTGAGATCCTCGACTGGCCCGAG GATCTGACCGGGCGTGACGCTCAGGAGGCCGCGCAGGTCGCGATCCGCGACCAGATGGAGCGGTTCGGAACTACCCGCAC CAACCCTCTACAGGACTTCTGGTCCTGCTCCTTCTACTGCGAAGCGCGCATTGGACAGGTTTATTGGTCGGCGCTCGCGA AACGCAACGGACTGAAGAATCCGGTCGACGCGATCGTATCGCTGGCCGCCTTCAAGAAGCGCGTAAAAGCGGGCGACGCC CTCAAACTGGTCGATGCGCCGGCAGGGCATCGCGCAATTGGGACCACGCGGACGATCACCAAGGTGCGCTCGGGCGATCT GATCCTCGAAGGCAAATCCTATCTCGGTTTCCCGCGGGCGTCGGCTTTCGCGTGCGATGGCAAGTTCGTTCGCATCTCGA TCGGATCGGAATATGAGCCGGACGCCCATCTGCTGTACGAGTGGATAGTGCAAAAGGCCGCGTGA
Upstream 100 bases:
>100_bases GTGAAGAGCCTCTCACCAACGAAATCGAGGCGTCTCTTCCGGGCGCCTGACATTCTCCGCCCGCGAACGGCGGAAAACCA ATCATCCGAGGAAATATGTA
Downstream 100 bases:
>100_bases GACATGGCCCTCATCGTCAAGGGCGGCGCCGTCTGCCAGAGCCCTCCGCGTCGGCGCCGACCATTCCGTATCGTGCAGAA GGGCTATCCCGACATCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MTDTTSSGAPARLYSQTPYDDRGNFHYQGDLYRPSDNLATLAGRIEPHLARCFPNASFAIQTQKFAGGRKITAEILDWPE DLTGRDAQEAAQVAIRDQMERFGTTRTNPLQDFWSCSFYCEARIGQVYWSALAKRNGLKNPVDAIVSLAAFKKRVKAGDA LKLVDAPAGHRAIGTTRTITKVRSGDLILEGKSYLGFPRASAFACDGKFVRISIGSEYEPDAHLLYEWIVQKAA
Sequences:
>Translated_234_residues MTDTTSSGAPARLYSQTPYDDRGNFHYQGDLYRPSDNLATLAGRIEPHLARCFPNASFAIQTQKFAGGRKITAEILDWPE DLTGRDAQEAAQVAIRDQMERFGTTRTNPLQDFWSCSFYCEARIGQVYWSALAKRNGLKNPVDAIVSLAAFKKRVKAGDA LKLVDAPAGHRAIGTTRTITKVRSGDLILEGKSYLGFPRASAFACDGKFVRISIGSEYEPDAHLLYEWIVQKAA >Mature_233_residues TDTTSSGAPARLYSQTPYDDRGNFHYQGDLYRPSDNLATLAGRIEPHLARCFPNASFAIQTQKFAGGRKITAEILDWPED LTGRDAQEAAQVAIRDQMERFGTTRTNPLQDFWSCSFYCEARIGQVYWSALAKRNGLKNPVDAIVSLAAFKKRVKAGDAL KLVDAPAGHRAIGTTRTITKVRSGDLILEGKSYLGFPRASAFACDGKFVRISIGSEYEPDAHLLYEWIVQKAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25885; Mature: 25754
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTTSSGAPARLYSQTPYDDRGNFHYQGDLYRPSDNLATLAGRIEPHLARCFPNASFAI CCCCCCCCCCCEECCCCCCCCCCCEEEECCEECCCCCHHHHHHHCCHHHHHHCCCCCEEE QTQKFAGGRKITAEILDWPEDLTGRDAQEAAQVAIRDQMERFGTTRTNPLQDFWSCSFYC EEHHHCCCCEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEE EARIGQVYWSALAKRNGLKNPVDAIVSLAAFKKRVKAGDALKLVDAPAGHRAIGTTRTIT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH KVRSGDLILEGKSYLGFPRASAFACDGKFVRISIGSEYEPDAHLLYEWIVQKAA EECCCCEEEECCCCCCCCCCCEEEECCEEEEEEECCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TDTTSSGAPARLYSQTPYDDRGNFHYQGDLYRPSDNLATLAGRIEPHLARCFPNASFAI CCCCCCCCCCEECCCCCCCCCCCEEEECCEECCCCCHHHHHHHCCHHHHHHCCCCCEEE QTQKFAGGRKITAEILDWPEDLTGRDAQEAAQVAIRDQMERFGTTRTNPLQDFWSCSFYC EEHHHCCCCEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEE EARIGQVYWSALAKRNGLKNPVDAIVSLAAFKKRVKAGDALKLVDAPAGHRAIGTTRTIT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH KVRSGDLILEGKSYLGFPRASAFACDGKFVRISIGSEYEPDAHLLYEWIVQKAA EECCCCEEEECCCCCCCCCCCEEEECCEEEEEEECCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA