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The map label for this gene is czcR [H]

Identifier: 148550594

GI number: 148550594

Start: 48608

End: 49519

Strand: Direct

Name: czcR [H]

Synonym: Swit_5155

Alternate gene names: 148550594

Gene position: 48608-49519 (Clockwise)

Preceding gene: 148550589

Following gene: 148550603

Centisome position: 15.67

GC content: 57.02

Gene sequence:

>912_bases
ATGGTGATGAATCGGATCGCGCTCTACCATCTGGAAACCCTGCTTTGGATCAACCGCCTTGGCTCGTTCAGCGCGGCAGC
GAATCGCCTCAACACCACGCAACCGGGCATTTCCGCGCGAATACGCGAACTTGAGAATCACCTGGGAATTCCGTTGTTCG
CGCGACAAGGGCGTAACATGATCCTGTCTGTCCAGGGCCGTGAACTGGTGCGCCGATGCGAGCAGGTGTGGCCGTCGCTT
CAACAGGCCCTGCTCAATCCGGTGGACCTCAGCAGCGTGGCCGGCATCGTCCGTATCGGATCGGGTGAAATTGCGGCCGC
CAGTTGCCTGTCCGCTTTCGTGAATGCGATCCGTCAGGAGATGCCAGGGCTTTCACTGGAGATCGAAATCGACCTGACAT
CGAAACTGATCGATGGACTTCTAAGTGGCGCGGCCGATCTGGTTTTCGCGATCGGTCCCGTTGAAATGCCCGGCATCAAG
ACGCGGCGGATCGGCGAGGTCGAGTTGATATGGCTCGCGTCTCCCAGCCTCGCGAACATGCTGGAGCAGCGACTCGTGCC
CCCAAAAGACCTGCTGTTCTGGTCATTGGCACGAAGCTCCCCCATGCATGCGATCATGCATGATGCCTTGGGTGGACTGG
GATATCATGACGGGAAGATAAACACCTGCAACGACCTGCATTCTCTGATCGATATCATCGTGTCCAGCGGCGGCGTAAGC
TTGTTTCCTCTCAACATGGTGGGAGAGAAGATATCTAGTGGCGAGATCGTTCGCGTTTTCGATCAGTCACCGCCTCCTAT
TCTGTTGCAGGCAGCGATCCGATCTGCTGAGAAGGACCCGATCATTCTTCATATCTTCGAAATTGCCCATGCGCTGAAAA
CCGAAGAGGTATCGGCGCCCGCCGCTCGATAG

Upstream 100 bases:

>100_bases
GAACCCTTCCCTTCCCCTGCCTGCTGCGCTTTCGGGGTCTGGCCATGAGATAAATGTCACATCAGTTCAAATCATAGTTC
ATTCGATGTATGTATAACCA

Downstream 100 bases:

>100_bases
GACCGGGTCTTCGGCCGCGCTTCCGCATGATCGTTCGTTACAGGGGCGCTGGACCGCGCCAGTTGGGCCGTGTCGGCAAT
GTGCCGTTCGGACGCCTGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MVMNRIALYHLETLLWINRLGSFSAAANRLNTTQPGISARIRELENHLGIPLFARQGRNMILSVQGRELVRRCEQVWPSL
QQALLNPVDLSSVAGIVRIGSGEIAAASCLSAFVNAIRQEMPGLSLEIEIDLTSKLIDGLLSGAADLVFAIGPVEMPGIK
TRRIGEVELIWLASPSLANMLEQRLVPPKDLLFWSLARSSPMHAIMHDALGGLGYHDGKINTCNDLHSLIDIIVSSGGVS
LFPLNMVGEKISSGEIVRVFDQSPPPILLQAAIRSAEKDPIILHIFEIAHALKTEEVSAPAAR

Sequences:

>Translated_303_residues
MVMNRIALYHLETLLWINRLGSFSAAANRLNTTQPGISARIRELENHLGIPLFARQGRNMILSVQGRELVRRCEQVWPSL
QQALLNPVDLSSVAGIVRIGSGEIAAASCLSAFVNAIRQEMPGLSLEIEIDLTSKLIDGLLSGAADLVFAIGPVEMPGIK
TRRIGEVELIWLASPSLANMLEQRLVPPKDLLFWSLARSSPMHAIMHDALGGLGYHDGKINTCNDLHSLIDIIVSSGGVS
LFPLNMVGEKISSGEIVRVFDQSPPPILLQAAIRSAEKDPIILHIFEIAHALKTEEVSAPAAR
>Mature_303_residues
MVMNRIALYHLETLLWINRLGSFSAAANRLNTTQPGISARIRELENHLGIPLFARQGRNMILSVQGRELVRRCEQVWPSL
QQALLNPVDLSSVAGIVRIGSGEIAAASCLSAFVNAIRQEMPGLSLEIEIDLTSKLIDGLLSGAADLVFAIGPVEMPGIK
TRRIGEVELIWLASPSLANMLEQRLVPPKDLLFWSLARSSPMHAIMHDALGGLGYHDGKINTCNDLHSLIDIIVSSGGVS
LFPLNMVGEKISSGEIVRVFDQSPPPILLQAAIRSAEKDPIILHIFEIAHALKTEEVSAPAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=284, Percent_Identity=24.6478873239437, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=240, Percent_Identity=22.0833333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=173, Percent_Identity=27.1676300578035, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32934; Mature: 32934

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMNRIALYHLETLLWINRLGSFSAAANRLNTTQPGISARIRELENHLGIPLFARQGRNM
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEECCCCCE
ILSVQGRELVRRCEQVWPSLQQALLNPVDLSSVAGIVRIGSGEIAAASCLSAFVNAIRQE
EEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
MPGLSLEIEIDLTSKLIDGLLSGAADLVFAIGPVEMPGIKTRRIGEVELIWLASPSLANM
CCCCEEEEEECHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHH
LEQRLVPPKDLLFWSLARSSPMHAIMHDALGGLGYHDGKINTCNDLHSLIDIIVSSGGVS
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
LFPLNMVGEKISSGEIVRVFDQSPPPILLQAAIRSAEKDPIILHIFEIAHALKTEEVSAP
EEEHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCC
AAR
CCC
>Mature Secondary Structure
MVMNRIALYHLETLLWINRLGSFSAAANRLNTTQPGISARIRELENHLGIPLFARQGRNM
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEECCCCCE
ILSVQGRELVRRCEQVWPSLQQALLNPVDLSSVAGIVRIGSGEIAAASCLSAFVNAIRQE
EEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
MPGLSLEIEIDLTSKLIDGLLSGAADLVFAIGPVEMPGIKTRRIGEVELIWLASPSLANM
CCCCEEEEEECHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHH
LEQRLVPPKDLLFWSLARSSPMHAIMHDALGGLGYHDGKINTCNDLHSLIDIIVSSGGVS
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
LFPLNMVGEKISSGEIVRVFDQSPPPILLQAAIRSAEKDPIILHIFEIAHALKTEEVSAP
EEEHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCC
AAR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA