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The map label for this gene is yocH [H]

Identifier: 148380769

GI number: 148380769

Start: 2974365

End: 2975390

Strand: Reverse

Name: yocH [H]

Synonym: CBO2809

Alternate gene names: 148380769

Gene position: 2975390-2974365 (Counterclockwise)

Preceding gene: 148380770

Following gene: 148380768

Centisome position: 76.55

GC content: 31.77

Gene sequence:

>1026_bases
TTGAATAAAAAAGTTTTATCTTTGATTATAATGTTAAATTTAATTTTAAGTATAGGTAGTAATGTTTTGGCTGCACCATC
TATTAAGGAATCCAATGAGTTAAAAGAAACTAGAGAGCAGAAAAAACAAATACAGCAAAGAGTTGAAAAAATGGACAGCG
AAATTGATAGTGTAATAAATGAAATTGATAAAAATAAGCAACTTATGAATAAGGTTAATAGAGATGTTAAAGATACAGAG
AATAAATTAAACCAGGTAAAAAATAATGTAAAAGAAAAAGAAGAGCTGTTTGGCAAAAGAGTAAGAGCTATGTATATAAG
TGGTGGAGATAGCTATCTAGATATACTTTTAGGCTCAGAAAATTTAAGTGATTTTATGTCAAGGGTAGATACAGTTTCAA
AAATAATGAAATTTGATGTAAATGTTGTTACTAAGTTAAAGGAAGAAAAAGAAGCTATAGCAAAACAAAAAGAGAACTTA
GATCAGGAGAAGAATAAATTATCGGCTTTAAAGAAAAATAATGAAGTTGCTTTATTAAGATTGAATAAGAATGTAGAAGA
AGAAAAGGGAGTTCTTAGTAAAGTAAATGAAAAGGAAAATGAATTAGTAGCTAATGAAGCTGCAAAGGCTGAAGAGGCTA
GAAAAGCTGAAGAGAGTAGTAAAAAAGCTAAAGAGCTAGCATCCAGTGATAGTAATAGTTCAAAGGGGCAAACTTTATCC
CGTGGCGAATCAAATTCTACGTCCTATTCCAAAGTAATGGTAATGGAAGCCACTGCTTATGCAGGGGATGGAATAACTGC
TTCAGGGAACGGAACAAATAGAAATCCCAATGGATATAGTACTATAGCTGTAGACCCTAGGGTAATACCTTTGGGATCTA
GGGTTTATGTAGAAGGTTATGGATATGCTATTGCACATGATACTGGTGGTGCTATTAAAGGCAATAGAATAGATTTGTTT
ATGAACTCAGAGGCTGAGTGTAATAGTTGGGGAATAAGAAGTGTAAAAGTTTATATACTAGGATAG

Upstream 100 bases:

>100_bases
CTTACTTCCGTATTATAAAATAGGAAGTATTAGAATTGTAAAGCATAGAATAAATATAGTAGATTTTATATTTATAGATA
ATTTATAGGAGAGTGATAAA

Downstream 100 bases:

>100_bases
TAATATATTTTTATTTTAGAGGCAAATAAAAATTATTTTATTTGTAGTAATAAATAGTAGTAATTAATTTATATAGAATA
ATATTATTTAAAGGTTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MNKKVLSLIIMLNLILSIGSNVLAAPSIKESNELKETREQKKQIQQRVEKMDSEIDSVINEIDKNKQLMNKVNRDVKDTE
NKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSENLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAIAKQKENL
DQEKNKLSALKKNNEVALLRLNKNVEEEKGVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGYGYAIAHDTGGAIKGNRIDLF
MNSEAECNSWGIRSVKVYILG

Sequences:

>Translated_341_residues
MNKKVLSLIIMLNLILSIGSNVLAAPSIKESNELKETREQKKQIQQRVEKMDSEIDSVINEIDKNKQLMNKVNRDVKDTE
NKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSENLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAIAKQKENL
DQEKNKLSALKKNNEVALLRLNKNVEEEKGVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGYGYAIAHDTGGAIKGNRIDLF
MNSEAECNSWGIRSVKVYILG
>Mature_341_residues
MNKKVLSLIIMLNLILSIGSNVLAAPSIKESNELKETREQKKQIQQRVEKMDSEIDSVINEIDKNKQLMNKVNRDVKDTE
NKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSENLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAIAKQKENL
DQEKNKLSALKKNNEVALLRLNKNVEEEKGVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGYGYAIAHDTGGAIKGNRIDLF
MNSEAECNSWGIRSVKVYILG

Specific function: Unknown

COG id: COG3883

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 37792; Mature: 37792

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKVLSLIIMLNLILSIGSNVLAAPSIKESNELKETREQKKQIQQRVEKMDSEIDSVIN
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIDKNKQLMNKVNRDVKDTENKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCC
NLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAIAKQKENLDQEKNKLSALKKNNEVALLR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LNKNVEEEKGVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
ECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGY
CCCCCCCCHHEEEEEEEEEECCCCEEECCCCCCCCCCCCEEEEECCEEEECCCEEEEEEC
GYAIAHDTGGAIKGNRIDLFMNSEAECNSWGIRSVKVYILG
CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MNKKVLSLIIMLNLILSIGSNVLAAPSIKESNELKETREQKKQIQQRVEKMDSEIDSVIN
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIDKNKQLMNKVNRDVKDTENKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCC
NLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAIAKQKENLDQEKNKLSALKKNNEVALLR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LNKNVEEEKGVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
ECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGY
CCCCCCCCHHEEEEEEEEEECCCCEEECCCCCCCCCCCCEEEEECCEEEECCCEEEEEEC
GYAIAHDTGGAIKGNRIDLFMNSEAECNSWGIRSVKVYILG
CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]