| Definition | Clostridium botulinum A str. ATCC 3502, complete genome. |
|---|---|
| Accession | NC_009495 |
| Length | 3,886,916 |
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The map label for this gene is fliD [H]
Identifier: 148380691
GI number: 148380691
Start: 2884884
End: 2887319
Strand: Reverse
Name: fliD [H]
Synonym: CBO2733
Alternate gene names: 148380691
Gene position: 2887319-2884884 (Counterclockwise)
Preceding gene: 148380692
Following gene: 148380690
Centisome position: 74.28
GC content: 29.43
Gene sequence:
>2436_bases ATGAGAATCGGTGGACTTTCAGGTCTAGATACTGATAATATGATAAAAAATATGATGAAACCCTATACTATGCGTGTAGA CAAAATGAAACAAAATGCTCAAATTGTAAAATGGCAACAGGATGCATATAGAAGTGTAATAAGTGGTATATCAGATATGA CAAAAAAATATTTTGATGTATTAAATGGAGACAACTATATGTTATCTTCAAAGAATTTTTCTAGTTTAAAGCCATCAGGA ATACCAGATACTTCAACTATTAAAATAAATACAGGAAGTGGTGCTGTATCAGGAAATTATTCTTTAAAGGTTATAGAATT AGCATCAAAGGCTGAAGCTATAAGTGATAAAGCCATAAATATAAAGACATTAAGTGAAGGTGATTATGGCATAAAAATAG ATGCTTCTAATAGCAAAATAGTTATAGATGGCAATGAAATAACATTAAGTGAAAGCAAATATAACAATGCATCAGATATA GCAGCTGAAATAAATAGCAAAATAAATGAAGATGGATCTACTCTAAAGGATAAAGTAAAAGCCGTAGTTAAAGATGGAAG TATAAAAATAGAAAATTTATTTAAAATAGATGATACAAATAAGGAATTAAAAGTAACAGTAGATGGAAAAGAATATACTG CAGAATTGGCTAAAGGAAATTTTACTTTAGAAGAATTAACAGATTCTATAAATGGTAAATTAGAAGTTGCTAAGGATGCT GATGGAAATGTGTTGGTAGAGGATAAAGGTGTTAAAGCGTCTTTATCAGCAGATGGTAAGAGCATAGAATTTACAGGAAC AACAGCGCAACCTAATTATTTAGTGGCTGGAGTTAATTTGGGAGGAACAACAGGTGGAACTGGAATTACAGGTACAGATG TAACAGTAGCTGGTAATTCAATAACTTATGCAAAAGAAATAATAGCAGGATTTAATGATACATTTAATATACAAATAGGT ACTGATTCTTCAAAACAAGTAAAACTAGCAGCAGGAACTATAAATTCAATAGATGAGTTAAAAACAAAACTTAATGATGC TTTTACTACTGCAGGACTAAATACTACTTTAACTGCAACAGTAAAAGATGGAAAGATAGTTTTGTCATCTAATTCAGATA AACAAGTAATAATTACAGGTGAATCAGGGAAGAGTGCTACTTCTTTACTTGGATTATCAGATAGATATGAAATGTCTATG AGCACTAATGAAAAAATGTCCAATATCGTAAATGAAGCAGTGGAATTTGAAATAAATGGCGTGAATTTTAAATATGATTT TACTAGTATAGGAGCAGAAAGAGATAAAACTATATCACAAATATTAGCAGATATATTAGATAAAGCTAATGTACAAGCTT CATATAGTGAAATTACCAAAAGCTTTACATTAAGATCAAAGGAAGAGGGAGCTACTCAAAATATTAAGTGTGAAGATAAA TCAGGAAATTTTGTGTCAAGTATATTGGGAAGCAGCACAACAGCAAAAGGTAAAGATGCTAAGATTGAACTTAAGACTCC TAATAATTCTACAGCAACAACAATAATAAAACCTTCTAATAATTTTACTATAGATGGAGTAAATTATAATATAGCAGGAG CAAAAAAAGACGAAGAGATAAGTTTTTCACTAGATGGTAATGTAGAGGATTCTTTTAATAAGATAAAAGGCTTTATTGAT GATTATAATAAATTAATAGATGAATTGCAGAAGAAAACTTCAGAAAAAAAATATAGAAAATATGAACCATTAACAGAAGA ACAGAAAAAAGAAATGAAAGAAAATGATATAAAACTTTGGGAAGAAAAAGCTAAGTCTGGTATATTAAGAAATGATTCAA ATATAGAAAACATGCTTTCAACTTTAAGAAGAGCTTTCTTCGATTCAGTAGAAGGGGCAGGACTTAGTTTAAAGGAATTA GGATTAACTACTTCTAAAGATTACCAAGAAGGCGGCAAAATAGTATTTGATCAAATATTGGATAAAAATGGAAATAACGG AGAAGCTAGGCTTAAGAAGCTTTTGAAAGAAGAACCAGATAAAGTATTTAAAATATTTTCACAAGAATCTACAAGCTATC CAAGCTATAGTGCAGATTTAACACTTACAGAAAGACAAATTAGAAATAAAGAAGAAGGTATATTTCAAAGAATAAATGAT ATATTTAAAGATTACACAAGAACATCAAGAAGTGCAAGTGGTAAGAGAGGTATATTAGTAGATAAGGCTGGTATAGAGGG AACTGTATCTGCAATAGATAATATACTTTATAAAGATTTAGAAAAAAGAGAAAAAGCTATACAAGATATGGAATTAAAAC TTATAGAAAGAGAAAATAAGTATTATATTCAATTTGCACAGCTGGAAAAATATATAAATCAAGCCAATTCTCAAGCTAGT TGGCTTGCACAACAATTAGGTGGTGGCATGAGTTAA
Upstream 100 bases:
>100_bases ATATATGGAATGAGGCATATAAACTTTCAAAGGCATCAAATGATTAGTGAAGTGACAAATTTATTTTAAATATAAGGTAA ACAAATGTGGAGGTGTTTTT
Downstream 100 bases:
>100_bases AAATAAATTTAAGTAGAGTGATTTGAATGAATAAACTAAAAGAACAATTAATAAATTATAGAGAGTTAACTTTAGAAATA ATACAAATTTTAGAAAAAGA
Product: flagellar hook-associated protein 2
Products: NA
Alternate protein names: HAP2; Filament cap protein [H]
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MRIGGLSGLDTDNMIKNMMKPYTMRVDKMKQNAQIVKWQQDAYRSVISGISDMTKKYFDVLNGDNYMLSSKNFSSLKPSG IPDTSTIKINTGSGAVSGNYSLKVIELASKAEAISDKAINIKTLSEGDYGIKIDASNSKIVIDGNEITLSESKYNNASDI AAEINSKINEDGSTLKDKVKAVVKDGSIKIENLFKIDDTNKELKVTVDGKEYTAELAKGNFTLEELTDSINGKLEVAKDA DGNVLVEDKGVKASLSADGKSIEFTGTTAQPNYLVAGVNLGGTTGGTGITGTDVTVAGNSITYAKEIIAGFNDTFNIQIG TDSSKQVKLAAGTINSIDELKTKLNDAFTTAGLNTTLTATVKDGKIVLSSNSDKQVIITGESGKSATSLLGLSDRYEMSM STNEKMSNIVNEAVEFEINGVNFKYDFTSIGAERDKTISQILADILDKANVQASYSEITKSFTLRSKEEGATQNIKCEDK SGNFVSSILGSSTTAKGKDAKIELKTPNNSTATTIIKPSNNFTIDGVNYNIAGAKKDEEISFSLDGNVEDSFNKIKGFID DYNKLIDELQKKTSEKKYRKYEPLTEEQKKEMKENDIKLWEEKAKSGILRNDSNIENMLSTLRRAFFDSVEGAGLSLKEL GLTTSKDYQEGGKIVFDQILDKNGNNGEARLKKLLKEEPDKVFKIFSQESTSYPSYSADLTLTERQIRNKEEGIFQRIND IFKDYTRTSRSASGKRGILVDKAGIEGTVSAIDNILYKDLEKREKAIQDMELKLIERENKYYIQFAQLEKYINQANSQAS WLAQQLGGGMS
Sequences:
>Translated_811_residues MRIGGLSGLDTDNMIKNMMKPYTMRVDKMKQNAQIVKWQQDAYRSVISGISDMTKKYFDVLNGDNYMLSSKNFSSLKPSG IPDTSTIKINTGSGAVSGNYSLKVIELASKAEAISDKAINIKTLSEGDYGIKIDASNSKIVIDGNEITLSESKYNNASDI AAEINSKINEDGSTLKDKVKAVVKDGSIKIENLFKIDDTNKELKVTVDGKEYTAELAKGNFTLEELTDSINGKLEVAKDA DGNVLVEDKGVKASLSADGKSIEFTGTTAQPNYLVAGVNLGGTTGGTGITGTDVTVAGNSITYAKEIIAGFNDTFNIQIG TDSSKQVKLAAGTINSIDELKTKLNDAFTTAGLNTTLTATVKDGKIVLSSNSDKQVIITGESGKSATSLLGLSDRYEMSM STNEKMSNIVNEAVEFEINGVNFKYDFTSIGAERDKTISQILADILDKANVQASYSEITKSFTLRSKEEGATQNIKCEDK SGNFVSSILGSSTTAKGKDAKIELKTPNNSTATTIIKPSNNFTIDGVNYNIAGAKKDEEISFSLDGNVEDSFNKIKGFID DYNKLIDELQKKTSEKKYRKYEPLTEEQKKEMKENDIKLWEEKAKSGILRNDSNIENMLSTLRRAFFDSVEGAGLSLKEL GLTTSKDYQEGGKIVFDQILDKNGNNGEARLKKLLKEEPDKVFKIFSQESTSYPSYSADLTLTERQIRNKEEGIFQRIND IFKDYTRTSRSASGKRGILVDKAGIEGTVSAIDNILYKDLEKREKAIQDMELKLIERENKYYIQFAQLEKYINQANSQAS WLAQQLGGGMS >Mature_811_residues MRIGGLSGLDTDNMIKNMMKPYTMRVDKMKQNAQIVKWQQDAYRSVISGISDMTKKYFDVLNGDNYMLSSKNFSSLKPSG IPDTSTIKINTGSGAVSGNYSLKVIELASKAEAISDKAINIKTLSEGDYGIKIDASNSKIVIDGNEITLSESKYNNASDI AAEINSKINEDGSTLKDKVKAVVKDGSIKIENLFKIDDTNKELKVTVDGKEYTAELAKGNFTLEELTDSINGKLEVAKDA DGNVLVEDKGVKASLSADGKSIEFTGTTAQPNYLVAGVNLGGTTGGTGITGTDVTVAGNSITYAKEIIAGFNDTFNIQIG TDSSKQVKLAAGTINSIDELKTKLNDAFTTAGLNTTLTATVKDGKIVLSSNSDKQVIITGESGKSATSLLGLSDRYEMSM STNEKMSNIVNEAVEFEINGVNFKYDFTSIGAERDKTISQILADILDKANVQASYSEITKSFTLRSKEEGATQNIKCEDK SGNFVSSILGSSTTAKGKDAKIELKTPNNSTATTIIKPSNNFTIDGVNYNIAGAKKDEEISFSLDGNVEDSFNKIKGFID DYNKLIDELQKKTSEKKYRKYEPLTEEQKKEMKENDIKLWEEKAKSGILRNDSNIENMLSTLRRAFFDSVEGAGLSLKEL GLTTSKDYQEGGKIVFDQILDKNGNNGEARLKKLLKEEPDKVFKIFSQESTSYPSYSADLTLTERQIRNKEEGIFQRIND IFKDYTRTSRSASGKRGILVDKAGIEGTVSAIDNILYKDLEKREKAIQDMELKLIERENKYYIQFAQLEKYINQANSQAS WLAQQLGGGMS
Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the
COG id: COG1345
COG function: function code N; Flagellar capping protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010810 - InterPro: IPR010809 - InterPro: IPR003481 [H]
Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]
EC number: NA
Molecular weight: Translated: 88896; Mature: 88896
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIGGLSGLDTDNMIKNMMKPYTMRVDKMKQNAQIVKWQQDAYRSVISGISDMTKKYFDV CCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH LNGDNYMLSSKNFSSLKPSGIPDTSTIKINTGSGAVSGNYSLKVIELASKAEAISDKAIN HCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEEEEEHHHHHHHCCCCEE IKTLSEGDYGIKIDASNSKIVIDGNEITLSESKYNNASDIAAEINSKINEDGSTLKDKVK EEEECCCCCEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHH AVVKDGSIKIENLFKIDDTNKELKVTVDGKEYTAELAKGNFTLEELTDSINGKLEVAKDA HHHCCCCEEEEEEEEECCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHHCCCEEEEEECC DGNVLVEDKGVKASLSADGKSIEFTGTTAQPNYLVAGVNLGGTTGGTGITGTDVTVAGNS CCCEEEECCCCEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCC ITYAKEIIAGFNDTFNIQIGTDSSKQVKLAAGTINSIDELKTKLNDAFTTAGLNTTLTAT HHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHEECCCCEEEEEE VKDGKIVLSSNSDKQVIITGESGKSATSLLGLSDRYEMSMSTNEKMSNIVNEAVEFEING EECCEEEEECCCCCEEEEECCCCCCHHHHCCCCCCEEECCCCHHHHHHHHHHHHEEEECC VNFKYDFTSIGAERDKTISQILADILDKANVQASYSEITKSFTLRSKEEGATQNIKCEDK EEEEEEHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECC SGNFVSSILGSSTTAKGKDAKIELKTPNNSTATTIIKPSNNFTIDGVNYNIAGAKKDEEI CCCHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEECCCEEEECCCCCCCCE SFSLDGNVEDSFNKIKGFIDDYNKLIDELQKKTSEKKYRKYEPLTEEQKKEMKENDIKLW EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EEKAKSGILRNDSNIENMLSTLRRAFFDSVEGAGLSLKELGLTTSKDYQEGGKIVFDQIL HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHCCCCEEEHHHH DKNGNNGEARLKKLLKEEPDKVFKIFSQESTSYPSYSADLTLTERQIRNKEEGIFQRIND CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHH IFKDYTRTSRSASGKRGILVDKAGIEGTVSAIDNILYKDLEKREKAIQDMELKLIERENK HHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC YYIQFAQLEKYINQANSQASWLAQQLGGGMS EEEEHHHHHHHHHHCCCHHHHHHHHHCCCCC >Mature Secondary Structure MRIGGLSGLDTDNMIKNMMKPYTMRVDKMKQNAQIVKWQQDAYRSVISGISDMTKKYFDV CCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH LNGDNYMLSSKNFSSLKPSGIPDTSTIKINTGSGAVSGNYSLKVIELASKAEAISDKAIN HCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEEEEEHHHHHHHCCCCEE IKTLSEGDYGIKIDASNSKIVIDGNEITLSESKYNNASDIAAEINSKINEDGSTLKDKVK EEEECCCCCEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHH AVVKDGSIKIENLFKIDDTNKELKVTVDGKEYTAELAKGNFTLEELTDSINGKLEVAKDA HHHCCCCEEEEEEEEECCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHHCCCEEEEEECC DGNVLVEDKGVKASLSADGKSIEFTGTTAQPNYLVAGVNLGGTTGGTGITGTDVTVAGNS CCCEEEECCCCEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCC ITYAKEIIAGFNDTFNIQIGTDSSKQVKLAAGTINSIDELKTKLNDAFTTAGLNTTLTAT HHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHEECCCCEEEEEE VKDGKIVLSSNSDKQVIITGESGKSATSLLGLSDRYEMSMSTNEKMSNIVNEAVEFEING EECCEEEEECCCCCEEEEECCCCCCHHHHCCCCCCEEECCCCHHHHHHHHHHHHEEEECC VNFKYDFTSIGAERDKTISQILADILDKANVQASYSEITKSFTLRSKEEGATQNIKCEDK EEEEEEHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECC SGNFVSSILGSSTTAKGKDAKIELKTPNNSTATTIIKPSNNFTIDGVNYNIAGAKKDEEI CCCHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEECCCEEEECCCCCCCCE SFSLDGNVEDSFNKIKGFIDDYNKLIDELQKKTSEKKYRKYEPLTEEQKKEMKENDIKLW EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EEKAKSGILRNDSNIENMLSTLRRAFFDSVEGAGLSLKELGLTTSKDYQEGGKIVFDQIL HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHCCCCEEEHHHH DKNGNNGEARLKKLLKEEPDKVFKIFSQESTSYPSYSADLTLTERQIRNKEEGIFQRIND CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHH IFKDYTRTSRSASGKRGILVDKAGIEGTVSAIDNILYKDLEKREKAIQDMELKLIERENK HHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC YYIQFAQLEKYINQANSQASWLAQQLGGGMS EEEEHHHHHHHHHHCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8195064; 9384377 [H]