Click here to switch to the map view.

The map label for this gene is yobU [H]

Identifier: 148379517

GI number: 148379517

Start: 1683503

End: 1684195

Strand: Reverse

Name: yobU [H]

Synonym: CBO1550

Alternate gene names: 148379517

Gene position: 1684195-1683503 (Counterclockwise)

Preceding gene: 148379518

Following gene: 148379515

Centisome position: 43.33

GC content: 28.28

Gene sequence:

>693_bases
ATGCCAATGAGTGAAGAGCTTTATAGTACTGAATTAAATAATAAAAAAAATCATGAATATTGTATTTATTGTTATGAAAA
TGGAGCTTTTAAGCATCCAAATTTAACTATAGAACAAATGATAGACGTATGTATACCTTTTATGAAAGAAAAAGGAATGA
AGAAAGATGAAGCAATAGCATTAATGAAAAATTGTTTACCCAATTTAAAAAGATGGAGAAAAGAAGATATAATTACTAAA
GTAGTAGAAAAAGATAAAATGATAATAGTTGGAAAAGAAATAAGAACAACTAACAAAGACGATGCCTTTATGGCTGTAAT
TCCAAAGCTTTGGGAAGAATTTGAGAATAAAAAACTTGGGGACAAAATATTAAATAAAGTAAATAAAGATGAGATTTTAG
GTTTATATACTGATTATGAAAATAAAGAATTTGGCTTATATTCTTTTATGGTGGGATTTCAAGTTACAGATAAAAATTCT
ATACCAGAAGGTATGACATATAAAGTGATACCAACTGCAAAATATTGTGTAGTAACAGCTAAAGGCAAAATGCCCGATAA
AATAGGAGCAGCTTGGGGATATATATGGAATGCAGGACTTGAAAGAACCTATACAGGAGATTTTGAACTCTATGACAAAA
GATATGATGGAACCGAAAATTCTGAAGTAGACATTTATGTAGCTATCAAATAA

Upstream 100 bases:

>100_bases
AAATATGACATAGTGTTGTCAAAGCCTTCCTATATAATACAAATATAAGCATAAGGAAGGGGAATAAAATATGTAACAAA
GATATTGTCAAAGTTGTGGA

Downstream 100 bases:

>100_bases
AAACTAGCTTAATATTAATATACTAAGCTAGTTGCCATAAAATATTACTACTTTAAGTATTAATACTTTATGGCTTTAAT
TTTTTTATATTTCTCTACAG

Product: transcription activator, effector binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALMKNCLPNLKRWRKEDIITK
VVEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNS
IPEGMTYKVIPTAKYCVVTAKGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK

Sequences:

>Translated_230_residues
MPMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALMKNCLPNLKRWRKEDIITK
VVEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNS
IPEGMTYKVIPTAKYCVVTAKGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK
>Mature_229_residues
PMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALMKNCLPNLKRWRKEDIITKV
VEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSI
PEGMTYKVIPTAKYCVVTAKGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 26749; Mature: 26618

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIA
CCCCHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LMKNCLPNLKRWRKEDIITKVVEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLG
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHH
DKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIPEGMTYKVIPTAKYCVVTA
HHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEE
KGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK
CCCCCHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
PMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIA
CCCHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LMKNCLPNLKRWRKEDIITKVVEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLG
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHH
DKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIPEGMTYKVIPTAKYCVVTA
HHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEE
KGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK
CCCCCHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]