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The map label for this gene is ydiP [C]

Identifier: 148379502

GI number: 148379502

Start: 1666335

End: 1667522

Strand: Direct

Name: ydiP [C]

Synonym: CBO1533

Alternate gene names: 148379502

Gene position: 1666335-1667522 (Clockwise)

Preceding gene: 148379501

Following gene: 148379503

Centisome position: 42.87

GC content: 32.07

Gene sequence:

>1188_bases
ATGAAAAGGAAAAAAATACTAGAAAATCTGAAATCACAAATAAAGAAAGGAAATCATATTATTGGTGTAGCCACAGGAAC
AGGAATGACAGCAAAGTATGCCAAAAAGGGTGGAGCAGATTTTCTTCTCATGTTGAACTCAGGTAGATTTCGTCAAATGG
GAAGAAGTTCATTAGCAGGGTTTTTACCCTTTTATAATAGTAATGATATGGTAATGGAATTTGCTTATAGAGAGATAATA
CCTTTGGTAAGGGACATGCCTATAATTTTTGGGTTTAATGCAACGGATCCCACAAAGGATATGGAAAGCTATATAGATGA
AATAAAAAGCAAGGGATTTTCTGGTATTAATAATTACCCAACAGTTGGATTAATAGATGGTGAGTTTAGTAAAGCTCTTG
AAGAGAAGGAATGCCATTATCTAATTGAAGTGGAAGCAATAAGAATAGCCCACCAAAAAGATATGTTTACCGTTGCATTC
GTATTTAATGATATGCAAGCAGCTCAAATGATTGAAGCTGGAGCAGATGTAATTTGTGTGCATTTAGGCTTAACAGGAGG
AGGGCTATTAGGAGCAAAGAAAGTTTTATCACTGGAAGCTGCAAAGATTAAAGCAGAAAAAATATTTAAAAAATGTGATG
AATTAAATCCAGATGTAATTAAGTTAATTTATGGAGGCCCTGTGAAAACTCCAACGGACGTTCAGTATATGTACAGTGAT
AATGAAAATTTAATGGGCTATATAGGTGGATCTGCTTTTGAAAGAATCCCTTCTGAAAAATTTATTACAAATATAACGAA
GGCTTTTAAAGTATCTTCACAATTAGATGAAGATGATTTAATGGTTAAAATGTTAGATGGAATTACAAAGCATTATGATT
ATGTTGAGTTTGTTAAAGAATATGTTACTAAAAATTATATGCGTGAAATTTCCTTTTCAGATTTGGCCAAGGTGGCTCAT
GTATCTAGGAGTTACCTAAGTACTTTGTTTAAAAAAGAGGTAGGCTGTAGTTTTCGAGAGTATTTAGTTAAATTTAGAAT
GGATAAAGCAGCAGAAATACTAGATAAAAAAAATATTCAGTTATCAGAGCTATCATCTTTAGTTGGATATGAAGATTATG
CCCAGTTTAGCAAAATGTTTAAAAAGTATAAAGGCTGTTCTCCGAAACAATATAAAAATATAACATAA

Upstream 100 bases:

>100_bases
AAGAGAAACTTTTAAAAATAGAAAAAGAGAACTCAAAAGGGTAAAACAAAACCACCCAAAACATACTGAATTGTTAAAAG
AGATAAGGGGCTTAGAAGGT

Downstream 100 bases:

>100_bases
ACACAAAAACACCTAATGTAATAACGTTTACACTAAAAAGTAAAAGCAGTATGATTAATTTGTAGTCAATCATACTGCTT
TTTATTTTAAGATAATATTT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAGFLPFYNSNDMVMEFAYREII
PLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAF
VFNDMQAAQMIEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGPVKTPTDVQYMYSD
NENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKEYVTKNYMREISFSDLAKVAH
VSRSYLSTLFKKEVGCSFREYLVKFRMDKAAEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT

Sequences:

>Translated_395_residues
MKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAGFLPFYNSNDMVMEFAYREII
PLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAF
VFNDMQAAQMIEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGPVKTPTDVQYMYSD
NENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKEYVTKNYMREISFSDLAKVAH
VSRSYLSTLFKKEVGCSFREYLVKFRMDKAAEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT
>Mature_395_residues
MKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAGFLPFYNSNDMVMEFAYREII
PLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYPTVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAF
VFNDMQAAQMIEAGADVICVHLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGPVKTPTDVQYMYSD
NENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKEYVTKNYMREISFSDLAKVAH
VSRSYLSTLFKKEVGCSFREYLVKFRMDKAAEILDKKNIQLSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT

Specific function: Unknown

COG id: COG5564

COG function: function code R; Predicted TIM-barrel enzyme, possibly a dioxygenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787987, Length=92, Percent_Identity=34.7826086956522, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR009215 [H]

Pfam domain/function: PF09370 TIM-br_sig_trns [H]

EC number: NA

Molecular weight: Translated: 44659; Mature: 44659

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAG
CCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
FLPFYNSNDMVMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYP
HCCEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
TVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAFVFNDMQAAQMIEAGADVICV
EEEEECCHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCEEEE
HLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGPVKTPTDVQYMYSD
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECC
NENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKE
CCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YVTKNYMREISFSDLAKVAHVSRSYLSTLFKKEVGCSFREYLVKFRMDKAAEILDKKNIQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
LSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRKKILENLKSQIKKGNHIIGVATGTGMTAKYAKKGGADFLLMLNSGRFRQMGRSSLAG
CCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
FLPFYNSNDMVMEFAYREIIPLVRDMPIIFGFNATDPTKDMESYIDEIKSKGFSGINNYP
HCCEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
TVGLIDGEFSKALEEKECHYLIEVEAIRIAHQKDMFTVAFVFNDMQAAQMIEAGADVICV
EEEEECCHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCEEEE
HLGLTGGGLLGAKKVLSLEAAKIKAEKIFKKCDELNPDVIKLIYGGPVKTPTDVQYMYSD
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECC
NENLMGYIGGSAFERIPSEKFITNITKAFKVSSQLDEDDLMVKMLDGITKHYDYVEFVKE
CCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YVTKNYMREISFSDLAKVAHVSRSYLSTLFKKEVGCSFREYLVKFRMDKAAEILDKKNIQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
LSELSSLVGYEDYAQFSKMFKKYKGCSPKQYKNIT
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]