Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 148379482

GI number: 148379482

Start: 1646984

End: 1647607

Strand: Direct

Name: ycdC [C]

Synonym: CBO1513

Alternate gene names: 148379482

Gene position: 1646984-1647607 (Clockwise)

Preceding gene: 148379481

Following gene: 148379483

Centisome position: 42.37

GC content: 26.44

Gene sequence:

>624_bases
ATGAATAACAATTTAAAGAATATACCAAAAGATAAAAAAGAGGCCATACTAGAAGCTGCGTTGGAAGAATTCGCTATAGG
TGGATATGAAAATGCCTCTACAAATAAAATAGTAGAAAAAGCGGGCATATCAAAGGGGCTTCTATTCCATTACTTTGGTA
ATAAGAAGGGATTATTTATATATGTATATAACTATTATTTTGAGTTTTTGAAAAGAGAGTTATATATAAAAGTAGATACA
AAGGAAAGGGATATTTTAGAACGAGTAAAAAAATGGACTATGATAAAGATGGAACTCATAGATAAATATACCAGTGTATT
TATGCTATTTATAAAATCCACATTAAATATGCCTAAGGATATAAAATCTACTTTAGAAAAAATTCAATCAGAGGAAAGAA
AGGAAGCCTATGAAAACTTTTTATCTAATATAGATTATTCTAAATTTAAAGAGAATATTGACATACAGAAGTGCTTAAAA
ATACTAATGTGGACATTGGAGAAGTATGGTGAAGAATATATAATTCTTAATATAAATGAGCCTTTATTGGAAATAAATAA
AGATAATATTAAGAAAGAAATAGAAGAATATGTGGATATATTAAAGGCTGGCTTTTATAAATAG

Upstream 100 bases:

>100_bases
TAATATATTTAACCTATGAAATATCAAAAATATTCTCTAAGAGAAAAATTTTAGCCATATCTATGGTAGAGTTTACGAAG
ACTGAATAGGAGAAAAATTT

Downstream 100 bases:

>100_bases
TTTATTAATTATATAAAATGCTGACTAAAAATAGATTTAATTTTAATATAACAAATATAAAAAAATTAGGAAATGATTTA
GTTTATAGATTTAATTTTTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; AcrR Transcriptional Regulator TetR Family; Transcription Regulator; Regulatory Protein TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNNNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFIYVYNYYFEFLKRELYIKVDT
KERDILERVKKWTMIKMELIDKYTSVFMLFIKSTLNMPKDIKSTLEKIQSEERKEAYENFLSNIDYSKFKENIDIQKCLK
ILMWTLEKYGEEYIILNINEPLLEINKDNIKKEIEEYVDILKAGFYK

Sequences:

>Translated_207_residues
MNNNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFIYVYNYYFEFLKRELYIKVDT
KERDILERVKKWTMIKMELIDKYTSVFMLFIKSTLNMPKDIKSTLEKIQSEERKEAYENFLSNIDYSKFKENIDIQKCLK
ILMWTLEKYGEEYIILNINEPLLEINKDNIKKEIEEYVDILKAGFYK
>Mature_207_residues
MNNNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFIYVYNYYFEFLKRELYIKVDT
KERDILERVKKWTMIKMELIDKYTSVFMLFIKSTLNMPKDIKSTLEKIQSEERKEAYENFLSNIDYSKFKENIDIQKCLK
ILMWTLEKYGEEYIILNINEPLLEINKDNIKKEIEEYVDILKAGFYK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24673; Mature: 24673

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHEEEECCCCCEEE
YVYNYYFEFLKRELYIKVDTKERDILERVKKWTMIKMELIDKYTSVFMLFIKSTLNMPKD
EHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IKSTLEKIQSEERKEAYENFLSNIDYSKFKENIDIQKCLKILMWTLEKYGEEYIILNINE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC
PLLEINKDNIKKEIEEYVDILKAGFYK
HHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHEEEECCCCCEEE
YVYNYYFEFLKRELYIKVDTKERDILERVKKWTMIKMELIDKYTSVFMLFIKSTLNMPKD
EHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IKSTLEKIQSEERKEAYENFLSNIDYSKFKENIDIQKCLKILMWTLEKYGEEYIILNINE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC
PLLEINKDNIKKEIEEYVDILKAGFYK
HHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA