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The map label for this gene is yhfW [H]

Identifier: 148379476

GI number: 148379476

Start: 1636104

End: 1637669

Strand: Reverse

Name: yhfW [H]

Synonym: CBO1505

Alternate gene names: 148379476

Gene position: 1637669-1636104 (Counterclockwise)

Preceding gene: 148379480

Following gene: 148379473

Centisome position: 42.13

GC content: 31.86

Gene sequence:

>1566_bases
ATGAATAAATCATGTAATACCTGTGAAAATTTTGAAGGCGTTTTTAAATCTTATTGGTTAGACTCTACTCCAGAAACAAA
CCATCCTGTTTTAAATGAAGATATCACTGTGGATATAACTGTTATCGGTGGTGGTATAGTAGGAATTACCGCTTCTCTTC
TTCTAAAAAAAGAAGGTTTCAAGGTTGCGCTAATAGATGCTGATAAAATATGCCAAGGTACTTCTGGCCATACTACGGCC
AAAATAACCTCTCAACATCATTTAATATACGATAAGTTAATTACTGAAATGGGAATAGAAAAGGCACAAAAGTATGCAGA
TGCCAATGAATTTGCAATAAATTTCATAGAGAATATAGTTAATGAATATTCTATAGACTGTGATTTTCACAGACTCCCTG
CTTATATTTATACTGAAGATGAAAACTTTGTATCTTCAATAAAAAAAGAAGCAGAAGCAGCTTTAAGCTTAGGATTAAAA
GCAAAATTTTTAGATAGTATTCCTATTTCTTTACCTGTAAAAGCTGCTTTATGTTTTGAAAATCAAGCTCAATTTCATCC
ACGAAAATATTTATTAGACCTAGCCAATAAAATATCAGGAGATGGAAGTCATATATTTGAAAATACAAAAATAGTAGACA
TTGATAGCGATAATAGCTGCGTATGTACTACTGATAATGAGAAGAAAATATCTTCTTCAAAAATTATTATAGCTTCACAC
TTTCCTTGTTATGATGCTTTAGGATTATACTTTGCAAGACTTTCTCCCAAAAAATCTTATGTTTTAGCTGTAAAAACGAA
GGAAAACTTTCCTGAAGGTACGTTTATAAATGCTGAAGAACCTGGACGTTCCCTTCGTTGTCAAAATTATAAGGATAGTA
AAATTGTTCTTGTAGGCGGTGAGGGGCATAAAACAGCTCATGGCGAAAACACGTTAACTCACTATAAAAATTTAAAATCC
TTTGCAGAAAAAACTTTTAATATAGATGATATATTATACTATTGGTCAACTCAAGATTACATGACAGTAGATGGAGTACC
TTACATAGGGCATTTAACCTCTTCTACTAAAAATATTTATGTAGCTACAGGTTTTGGAGAATGGGGAATGACAAATGGTA
CTGCTGCCGCCATATTGCTAAAGGATCTCATTATCGATAAAAAAAATCCCTGGGAGGATTTATATAATCCATCAAGACCT
ATGACCTCCAGTTCCATTAAAAACTTATTTACTTTAAATATAGATGTAGCCAAAGAACTTGTTAAAGGGAAATTACAAGG
TGCACCTAATACATTAGACCTTAATAATGACGAAGGAAAAGTTGTTACAATTGATGGACGAAAGTATGGAGCTTATAAAG
ATAATGCTGGTGCTATTCATTTAGTAGATAATACTTGTACTCATCTAGGTTGTGAACTTAAATGGAATGATGCAGAAAAG
TCTTGGGATTGCCCTTGTCATGGTTCTAGATTTAGCTATGAAGGTGATATTATTGAAGGACCTGCTATTAATAAATTAAA
TCATTATAAAGAAAATCCTAATAGAATTGATCCAAATATTTTATAA

Upstream 100 bases:

>100_bases
CATTATTAAATTAAATCTTAGAATATTTCTTTATTAATTACAAAAGCTAACATATATATTTAGATCTATGTATTATTAGT
TAAAGAAAGGATAGATATTG

Downstream 100 bases:

>100_bases
TATTATAAAAATGATTCTAAGATTAAGATGGAGGTCTATTTTTCATACTAGAACTCCATCTTAACTTTAGAATCATTTAA
TAATTACTTAATTTATTCTA

Product: oxidoreductase, FAD dependent

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MNKSCNTCENFEGVFKSYWLDSTPETNHPVLNEDITVDITVIGGGIVGITASLLLKKEGFKVALIDADKICQGTSGHTTA
KITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIVNEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLK
AKFLDSIPISLPVKAALCFENQAQFHPRKYLLDLANKISGDGSHIFENTKIVDIDSDNSCVCTTDNEKKISSSKIIIASH
FPCYDALGLYFARLSPKKSYVLAVKTKENFPEGTFINAEEPGRSLRCQNYKDSKIVLVGGEGHKTAHGENTLTHYKNLKS
FAEKTFNIDDILYYWSTQDYMTVDGVPYIGHLTSSTKNIYVATGFGEWGMTNGTAAAILLKDLIIDKKNPWEDLYNPSRP
MTSSSIKNLFTLNIDVAKELVKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNAGAIHLVDNTCTHLGCELKWNDAEK
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKENPNRIDPNIL

Sequences:

>Translated_521_residues
MNKSCNTCENFEGVFKSYWLDSTPETNHPVLNEDITVDITVIGGGIVGITASLLLKKEGFKVALIDADKICQGTSGHTTA
KITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIVNEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLK
AKFLDSIPISLPVKAALCFENQAQFHPRKYLLDLANKISGDGSHIFENTKIVDIDSDNSCVCTTDNEKKISSSKIIIASH
FPCYDALGLYFARLSPKKSYVLAVKTKENFPEGTFINAEEPGRSLRCQNYKDSKIVLVGGEGHKTAHGENTLTHYKNLKS
FAEKTFNIDDILYYWSTQDYMTVDGVPYIGHLTSSTKNIYVATGFGEWGMTNGTAAAILLKDLIIDKKNPWEDLYNPSRP
MTSSSIKNLFTLNIDVAKELVKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNAGAIHLVDNTCTHLGCELKWNDAEK
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKENPNRIDPNIL
>Mature_521_residues
MNKSCNTCENFEGVFKSYWLDSTPETNHPVLNEDITVDITVIGGGIVGITASLLLKKEGFKVALIDADKICQGTSGHTTA
KITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIVNEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLK
AKFLDSIPISLPVKAALCFENQAQFHPRKYLLDLANKISGDGSHIFENTKIVDIDSDNSCVCTTDNEKKISSSKIIIASH
FPCYDALGLYFARLSPKKSYVLAVKTKENFPEGTFINAEEPGRSLRCQNYKDSKIVLVGGEGHKTAHGENTLTHYKNLKS
FAEKTFNIDDILYYWSTQDYMTVDGVPYIGHLTSSTKNIYVATGFGEWGMTNGTAAAILLKDLIIDKKNPWEDLYNPSRP
MTSSSIKNLFTLNIDVAKELVKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNAGAIHLVDNTCTHLGCELKWNDAEK
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKENPNRIDPNIL

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=383, Percent_Identity=24.2819843342037, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 57980; Mature: 57980

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSCNTCENFEGVFKSYWLDSTPETNHPVLNEDITVDITVIGGGIVGITASLLLKKEGF
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHEECCCC
KVALIDADKICQGTSGHTTAKITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIV
EEEEEEHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLKAKFLDSIPISLPVKAALCFE
HHCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEEEEEC
NQAQFHPRKYLLDLANKISGDGSHIFENTKIVDIDSDNSCVCTTDNEKKISSSKIIIASH
CCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEC
FPCYDALGLYFARLSPKKSYVLAVKTKENFPEGTFINAEEPGRSLRCQNYKDSKIVLVGG
CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEEEECC
EGHKTAHGENTLTHYKNLKSFAEKTFNIDDILYYWSTQDYMTVDGVPYIGHLTSSTKNIY
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCEEEEECCCCCEEE
VATGFGEWGMTNGTAAAILLKDLIIDKKNPWEDLYNPSRPMTSSSIKNLFTLNIDVAKEL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHCEEEEEEHHHHHHH
VKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNAGAIHLVDNTCTHLGCELKWNDAEK
HHHHHCCCCCEEECCCCCCEEEEECCCEECCCCCCCCEEEEECCCHHHCCCEEEECCCCC
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKENPNRIDPNIL
CCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNKSCNTCENFEGVFKSYWLDSTPETNHPVLNEDITVDITVIGGGIVGITASLLLKKEGF
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHEECCCC
KVALIDADKICQGTSGHTTAKITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIV
EEEEEEHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLKAKFLDSIPISLPVKAALCFE
HHCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEEEEEC
NQAQFHPRKYLLDLANKISGDGSHIFENTKIVDIDSDNSCVCTTDNEKKISSSKIIIASH
CCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEC
FPCYDALGLYFARLSPKKSYVLAVKTKENFPEGTFINAEEPGRSLRCQNYKDSKIVLVGG
CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEEEECC
EGHKTAHGENTLTHYKNLKSFAEKTFNIDDILYYWSTQDYMTVDGVPYIGHLTSSTKNIY
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCEEEEECCCCCEEE
VATGFGEWGMTNGTAAAILLKDLIIDKKNPWEDLYNPSRPMTSSSIKNLFTLNIDVAKEL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHCEEEEEEHHHHHHH
VKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNAGAIHLVDNTCTHLGCELKWNDAEK
HHHHHCCCCCEEECCCCCCEEEEECCCEECCCCCCCCEEEEECCCHHHCCCEEEECCCCC
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKENPNRIDPNIL
CCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]