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The map label for this gene is agrA [H]

Identifier: 148379170

GI number: 148379170

Start: 1299835

End: 1300554

Strand: Direct

Name: agrA [H]

Synonym: CBO1186

Alternate gene names: 148379170

Gene position: 1299835-1300554 (Clockwise)

Preceding gene: 148379169

Following gene: 148379171

Centisome position: 33.44

GC content: 26.53

Gene sequence:

>720_bases
ATGTTAAGAGTAATGATTTGTGAGGATAATGAAGTACATAGAGTTAAGCTGAAGCAAATTGTAGAGAATACTATCCTAAG
AGAAAAATTAGATTTAGATATAGTACTAGCTACAGAAAATCCCCAGGAAATAATAAGTTATATAAAAGAAAACAGAAGCA
CTGGTATTTATCTTTTGGATGTGGATCTAAAAAATGATATAAATGGTATAAAGCTTGGCGAAAAAATTAGAGAATTGGAT
CCATTAGGATATATAATATTTACTACTACTCATTTAGAAATGAGTTATTTAGCATTTAAATATAAAGTAGAAGCTATGGA
TTATGTAATTAAGGATGATGATGATTTTAAAGAAAGAGTAAATAGCTGTATCATAAAAGCTTATAATAGGTACCATAAAC
AAGAACATGAAGAAGAATATATTTCAATAGATACAGATACACGAATAATAAATATTAGACCAAGTGACATTTTATTCATT
GAAACTACAGGAACCCCTCATAAAATAAGAATTCATGAGGAAAATAGACAGATTGAAATGTATGCTAATTTGAAAGATAT
ACAAAAAAAACTTCCTTCAAATTTTTATAGGTGTCATAAATCTTACATTGTAAACAAAAATAAAATTGAAGAAATAGACA
AGAACCATAATAAGATAATAATGAAAAATGAGGAAGAGTGTTATGTTTCCTTTAGATATATGAGGGGACTAATAGTATGA

Upstream 100 bases:

>100_bases
TAAAGAAAACATTATCTTTCATGGGAAAAAATGTTGTTAGTATTTTTCATGTTTATATATGAATATCAAAAAGTTTTATA
TAAAGTAAGGAGAAAAAGTA

Downstream 100 bases:

>100_bases
CTTTTACTAATTTTATAAATATGTTTTTACATTATACAATTATTCCCTCTGTACTAATGAGTATTTTATGTTCCATTTCA
ATATATATTTTATATAAAAA

Product: DNA-binding response regulator, LytTr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIVLATENPQEIISYIKENRSTGIYLLDVDLKNDINGIKLGEKIRELD
PLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERVNSCIIKAYNRYHKQEHEEEYISIDTDTRIINIRPSDILFI
ETTGTPHKIRIHEENRQIEMYANLKDIQKKLPSNFYRCHKSYIVNKNKIEEIDKNHNKIIMKNEEECYVSFRYMRGLIV

Sequences:

>Translated_239_residues
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIVLATENPQEIISYIKENRSTGIYLLDVDLKNDINGIKLGEKIRELD
PLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERVNSCIIKAYNRYHKQEHEEEYISIDTDTRIINIRPSDILFI
ETTGTPHKIRIHEENRQIEMYANLKDIQKKLPSNFYRCHKSYIVNKNKIEEIDKNHNKIIMKNEEECYVSFRYMRGLIV
>Mature_239_residues
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIVLATENPQEIISYIKENRSTGIYLLDVDLKNDINGIKLGEKIRELD
PLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERVNSCIIKAYNRYHKQEHEEEYISIDTDTRIINIRPSDILFI
ETTGTPHKIRIHEENRQIEMYANLKDIQKKLPSNFYRCHKSYIVNKNKIEEIDKNHNKIIMKNEEECYVSFRYMRGLIV

Specific function: Required for high-level post-exponential phase expression of a series of secreted proteins [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=227, Percent_Identity=25.9911894273128, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082052, Length=250, Percent_Identity=25.2, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28553; Mature: 28553

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIVLATENPQEIISYIKENRSTGIYLLD
CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
VDLKNDINGIKLGEKIRELDPLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERV
EECCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEECCCHHHHHHH
NSCIIKAYNRYHKQEHEEEYISIDTDTRIINIRPSDILFIETTGTPHKIRIHEENRQIEM
HHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEE
YANLKDIQKKLPSNFYRCHKSYIVNKNKIEEIDKNHNKIIMKNEEECYVSFRYMRGLIV
EECHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCHHHEEEEEHHCCCCC
>Mature Secondary Structure
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIVLATENPQEIISYIKENRSTGIYLLD
CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
VDLKNDINGIKLGEKIRELDPLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERV
EECCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEECCCHHHHHHH
NSCIIKAYNRYHKQEHEEEYISIDTDTRIINIRPSDILFIETTGTPHKIRIHEENRQIEM
HHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEE
YANLKDIQKKLPSNFYRCHKSYIVNKNKIEEIDKNHNKIIMKNEEECYVSFRYMRGLIV
EECHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCHHHEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA