| Definition | Clostridium botulinum A str. ATCC 3502, complete genome. |
|---|---|
| Accession | NC_009495 |
| Length | 3,886,916 |
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The map label for this gene is chiA [H]
Identifier: 148379071
GI number: 148379071
Start: 1190771
End: 1192363
Strand: Direct
Name: chiA [H]
Synonym: CBO1081
Alternate gene names: 148379071
Gene position: 1190771-1192363 (Clockwise)
Preceding gene: 148379070
Following gene: 148379072
Centisome position: 30.64
GC content: 35.53
Gene sequence:
>1593_bases ATGAAATCCAAAAAACTTACTGCACTTGTTTTATCAGTATTAGTAGCTTCAGGAGCTACTTCGGCAATTCTTACAGAAAA AAATATAGTACAAGCTAAAGAGGTAAAAATTAGTAGTGTACAGTCTAAAATAGCTACTAATATAGGAATAGGAGAAGAAT CTTGGGGATCTACTGTTTTTGCACCATATGTAGATGCTTGTTCATACCCTGTGTTCTCCCTTACTGAATACGCAAAGGAA ACAGGAACTAAACATTTTATATTAGGATTTATAGTTGATAAAAATGGACAACCTTCCTGGGGAACTTATTATGATATGGA AGAAGGGCCTACAGATTATCAAGGTGGTGGATTATTAAAAGAAATTAAAGCTTTAAGACAAATGGGCGGAGATGTAATGG TATCTTTTGGGGGTGAAGCAAATACTCCATTAGCAGCATCAATTAAAGATGTTAATAAATTAAAAGATGCATATAAAAAA GTAATTAAAGACTATGGATTAACTCATATAGATTTTGATATTGAAGGAGCTTGGACAGCTGATGCCGCTTCTATAGAAAG ACGTTCACAAGCTATTGCATTACTTCAAAAGGAACTTAAAGCTGAAAATCATCCACTTAAAATATGGTATACATTACCCG TATTGCCTTCAGGAATGACTAATGGGGTAGATGTAGTAAAGAGTGCTGTTAAAAATGGTGTTGAGCTAAGTGGAGTAAAT GTAATGACTATGTGTTTTGGACAGAAGGCTCCAGATGGAACTATGGGAGATTTAGTTGTTGAGTCAGCTAAAAGTGTTCA TAAACAATTAAAGGATATATATACACAAGCTAATATACAAAAGTCTGATAAAGAAATTTGGAAAATGATAGGAGTAACTC CTATGAATGGTTTAGATTATAGTGGAAGTATACTTGATCAAAATGGAGCAAGAAAGGTTGCAAGCTTTGGTAAAACAGTA GGAATGGGACTTATAGGTATGTGGTCAGTAAATAGAGATTATCAAAATCCTAAGGGTTCAACAAATTACGTATCTATAAC GGATAGTTCTATATTACAAGAAAAATTTGAGTTTGGTAAAATACTTTCAAATTATGATTCAAATGATGGTTCAGGTATAA TAGAAAAACCAGGTACAACTGACCCAGAGAATCCAGGCGATGGTGAAGGTGGAGGAGAAGTAGAAGGTGTTCCTGCATAT AAGCCACAACAAGAATATTCGGCAGGAGATAAAGTTAGCTATAAAGGGAAGATTTATCAAGCCAAATGGTGGACAAAAGG GTTTGCACCAGATACGGCAGTACAAAATTCCTGGGATACACCGTGGGAACTAATAGGGAATTCAGATGATGGTAAAGATG TTGAAGACGGTAAAGATGTTGAAGATGGTAAAGATGTCGAAGATGGTAAAGATATTGAAGATGGAGGAGAAGTAGGAAGC GCTCCTGCATATAATCTACAACAAGAATATTGGGGAGGAGATAAAGTTAGTTACAAAGGAAAGGTTTATCAAGCCAAATG GTGGACAAAAGGGTTTGCGCCAGATACAGTAGTAGAAAATACATGGGATACACCTTGGGCGCTAATAGGATAA
Upstream 100 bases:
>100_bases ATTTCTCAAATGATAAATAATACTCCAAATAGTAGTTAAAAAATTACTAAGGTTTTACTATTTATCTTATTAAAATATTA ATGATGTGGAGGTATATATT
Downstream 100 bases:
>100_bases GATATAGTATTGATAAAATTAAATATATAAATTTTTCAAGAGTATTGGGTTAGAGGTATATTTCTCTCTAATCCAATACT TTATTTTAACCAATAAACAT
Product: putative glycosyl hydrolase
Products: NA
Alternate protein names: Chitinase; Lysozyme [H]
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MKSKKLTALVLSVLVASGATSAILTEKNIVQAKEVKISSVQSKIATNIGIGEESWGSTVFAPYVDACSYPVFSLTEYAKE TGTKHFILGFIVDKNGQPSWGTYYDMEEGPTDYQGGGLLKEIKALRQMGGDVMVSFGGEANTPLAASIKDVNKLKDAYKK VIKDYGLTHIDFDIEGAWTADAASIERRSQAIALLQKELKAENHPLKIWYTLPVLPSGMTNGVDVVKSAVKNGVELSGVN VMTMCFGQKAPDGTMGDLVVESAKSVHKQLKDIYTQANIQKSDKEIWKMIGVTPMNGLDYSGSILDQNGARKVASFGKTV GMGLIGMWSVNRDYQNPKGSTNYVSITDSSILQEKFEFGKILSNYDSNDGSGIIEKPGTTDPENPGDGEGGGEVEGVPAY KPQQEYSAGDKVSYKGKIYQAKWWTKGFAPDTAVQNSWDTPWELIGNSDDGKDVEDGKDVEDGKDVEDGKDIEDGGEVGS APAYNLQQEYWGGDKVSYKGKVYQAKWWTKGFAPDTVVENTWDTPWALIG
Sequences:
>Translated_530_residues MKSKKLTALVLSVLVASGATSAILTEKNIVQAKEVKISSVQSKIATNIGIGEESWGSTVFAPYVDACSYPVFSLTEYAKE TGTKHFILGFIVDKNGQPSWGTYYDMEEGPTDYQGGGLLKEIKALRQMGGDVMVSFGGEANTPLAASIKDVNKLKDAYKK VIKDYGLTHIDFDIEGAWTADAASIERRSQAIALLQKELKAENHPLKIWYTLPVLPSGMTNGVDVVKSAVKNGVELSGVN VMTMCFGQKAPDGTMGDLVVESAKSVHKQLKDIYTQANIQKSDKEIWKMIGVTPMNGLDYSGSILDQNGARKVASFGKTV GMGLIGMWSVNRDYQNPKGSTNYVSITDSSILQEKFEFGKILSNYDSNDGSGIIEKPGTTDPENPGDGEGGGEVEGVPAY KPQQEYSAGDKVSYKGKIYQAKWWTKGFAPDTAVQNSWDTPWELIGNSDDGKDVEDGKDVEDGKDVEDGKDIEDGGEVGS APAYNLQQEYWGGDKVSYKGKVYQAKWWTKGFAPDTVVENTWDTPWALIG >Mature_530_residues MKSKKLTALVLSVLVASGATSAILTEKNIVQAKEVKISSVQSKIATNIGIGEESWGSTVFAPYVDACSYPVFSLTEYAKE TGTKHFILGFIVDKNGQPSWGTYYDMEEGPTDYQGGGLLKEIKALRQMGGDVMVSFGGEANTPLAASIKDVNKLKDAYKK VIKDYGLTHIDFDIEGAWTADAASIERRSQAIALLQKELKAENHPLKIWYTLPVLPSGMTNGVDVVKSAVKNGVELSGVN VMTMCFGQKAPDGTMGDLVVESAKSVHKQLKDIYTQANIQKSDKEIWKMIGVTPMNGLDYSGSILDQNGARKVASFGKTV GMGLIGMWSVNRDYQNPKGSTNYVSITDSSILQEKFEFGKILSNYDSNDGSGIIEKPGTTDPENPGDGEGGGEVEGVPAY KPQQEYSAGDKVSYKGKIYQAKWWTKGFAPDTAVQNSWDTPWELIGNSDDGKDVEDGKDVEDGKDVEDGKDIEDGGEVGS APAYNLQQEYWGGDKVSYKGKVYQAKWWTKGFAPDTVVENTWDTPWALIG
Specific function: Bifunctional enzyme with lysozyme/chitinase activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 chitin-binding type-3 domains [H]
Homologues:
Organism=Escherichia coli, GI1789736, Length=333, Percent_Identity=38.1381381381381, Blast_Score=210, Evalue=2e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02839 CBM_5_12 [H]
EC number: =3.2.1.14; =3.2.1.17 [H]
Molecular weight: Translated: 57569; Mature: 57569
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKKLTALVLSVLVASGATSAILTEKNIVQAKEVKISSVQSKIATNIGIGEESWGSTVF CCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH APYVDACSYPVFSLTEYAKETGTKHFILGFIVDKNGQPSWGTYYDMEEGPTDYQGGGLLK HHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHH EIKALRQMGGDVMVSFGGEANTPLAASIKDVNKLKDAYKKVIKDYGLTHIDFDIEGAWTA HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC DAASIERRSQAIALLQKELKAENHPLKIWYTLPVLPSGMTNGVDVVKSAVKNGVELSGVN CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCE VMTMCFGQKAPDGTMGDLVVESAKSVHKQLKDIYTQANIQKSDKEIWKMIGVTPMNGLDY EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC SGSILDQNGARKVASFGKTVGMGLIGMWSVNRDYQNPKGSTNYVSITDSSILQEKFEFGK CCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHH ILSNYDSNDGSGIIEKPGTTDPENPGDGEGGGEVEGVPAYKPQQEYSAGDKVSYKGKIYQ HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECCEEEE AKWWTKGFAPDTAVQNSWDTPWELIGNSDDGKDVEDGKDVEDGKDVEDGKDIEDGGEVGS EECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAYNLQQEYWGGDKVSYKGKVYQAKWWTKGFAPDTVVENTWDTPWALIG CCCCCCHHHHCCCCEEEECCEEEEEECCCCCCCCCCHHCCCCCCCCEECC >Mature Secondary Structure MKSKKLTALVLSVLVASGATSAILTEKNIVQAKEVKISSVQSKIATNIGIGEESWGSTVF CCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH APYVDACSYPVFSLTEYAKETGTKHFILGFIVDKNGQPSWGTYYDMEEGPTDYQGGGLLK HHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHH EIKALRQMGGDVMVSFGGEANTPLAASIKDVNKLKDAYKKVIKDYGLTHIDFDIEGAWTA HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC DAASIERRSQAIALLQKELKAENHPLKIWYTLPVLPSGMTNGVDVVKSAVKNGVELSGVN CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCE VMTMCFGQKAPDGTMGDLVVESAKSVHKQLKDIYTQANIQKSDKEIWKMIGVTPMNGLDY EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC SGSILDQNGARKVASFGKTVGMGLIGMWSVNRDYQNPKGSTNYVSITDSSILQEKFEFGK CCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHH ILSNYDSNDGSGIIEKPGTTDPENPGDGEGGGEVEGVPAYKPQQEYSAGDKVSYKGKIYQ HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECCEEEE AKWWTKGFAPDTAVQNSWDTPWELIGNSDDGKDVEDGKDVEDGKDVEDGKDIEDGGEVGS EECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAYNLQQEYWGGDKVSYKGKVYQAKWWTKGFAPDTVVENTWDTPWALIG CCCCCCHHHHCCCCEEEECCEEEEEECCCCCCCCCCHHCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2661540; 10419961; 10760150 [H]