Click here to switch to the map view.

The map label for this gene is 148378839

Identifier: 148378839

GI number: 148378839

Start: 954428

End: 955549

Strand: Reverse

Name: 148378839

Synonym: CBO0847

Alternate gene names: NA

Gene position: 955549-954428 (Counterclockwise)

Preceding gene: 148378844

Following gene: 148378838

Centisome position: 24.58

GC content: 30.39

Gene sequence:

>1122_bases
TTGAGAGACCTAAATATAGGTAAATGCATTATTCATAAGAGAAAAGAGAAGGGAATAACGCAGGAACAGCTGGCAAATTA
CATTGGAGTTTCTAAAGCATCTGTTTCCAAATGGGAATCTGGATCAAGTTATCCCGATATTGTTCTTCTTCCTGAGCTTG
CAACTTATTTTAATATTTCAGTGGATGAATTATTGGGATATTCTCCACAACTTACAAAGGAAGATATTAAAAAAATTTAT
AGTAAACTCTCTCATGAATTTGCTGTAAGGCCATTTGATGAAGCAATGGAACAGTGTAATAAATTAATAAAAAAATACTA
TTCTTGTTTTCCTTTTTTGCTTTCTATTATTCAATTATTATTAAACCATTCGAATTTGATAAAAAATGATGCAATAAAAA
AAGAAATTTTTCAGCAATGTGTATTCCTAAGTAGGAGAATAAAAGAGGAATCAGAGAACATTTCTTACATAAAAAATGCA
AATACTATGGAAGCATTGGCAGAGATGGCACTAGGAAATAGCGAAGAAGTTATTCGCTTATTGGATAATAAATTAGATCC
ATATAGAGGAGATGATGTCATACTGATTAATGCGTATCAGATGCAAGGGAAAACTGCCGAAGCAAATAAAGTGAATCAAA
TACTACTTTACAACAATGTAATAAACACATTAGCACTTCTAAACAATTATCTTTCCCTAAACATGATGGACCCAGTTTTG
TTTGAAAAGATTTATTCTCAAGGCATTCAGATTATTGATTCTTTTCAGTTAAAAGAGATTTTGACAAATGATGTTTTTGC
AATTCATATCATTGCTGCACAAGGGTATTTGATAACGCAAAATAAAGAAAAGGCAATAGATGCATTAGAGCGATATATGA
ACACTGTTTGTAGTATCCAATTTCCATTGAGTTTTAAAGAAAATGAATATTTTACTCATATAGGTAAATGGCTTGAGGAT
AATAATTTTATTGGAACAAACACTCCCGTGGATGAGATAACAATTAAGAAAAGTTTTGTTGATATAGTGGTTCAAAATCC
TGCATTTGAACCCTTAAGAGAAGATGAACGATATAATTTGCTTGTTAAAAAATTGAAAGAAAAGTTAGGTGAAAAAAAGT
GA

Upstream 100 bases:

>100_bases
AAACGAGTTTCCTGCAAGTTAACTTTTTCCACTAAGATTAACTACAAATCTATTTACAGGAAATAGGGCAATACATAAAA
TATTATTAGAGGTGATAAAT

Downstream 100 bases:

>100_bases
ATGCAATAAATATAGAAAATCTTAAAAAATCTTATGATGGGCAAATTAATGCGCTAAGCAATATAAGTCTAAGTATACCA
AAGGGTGAGATATTTGGCTT

Product: DNA-binding protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; HTH Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Family; HTH/TPR Domain-Containing Protein; HTH Motif Containing Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; HTH Domain Protein; Helix-Turn-Helix Domain Protein; Methylase Involved In Ubiquinone/Menaquinone Biosynthesis; Helix-Turn-Helix Protein; Transcriptional Regulator Domain-Containing Protein

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELLGYSPQLTKEDIKKIY
SKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPFLLSIIQLLLNHSNLIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNA
NTMEALAEMALGNSEEVIRLLDNKLDPYRGDDVILINAYQMQGKTAEANKVNQILLYNNVINTLALLNNYLSLNMMDPVL
FEKIYSQGIQIIDSFQLKEILTNDVFAIHIIAAQGYLITQNKEKAIDALERYMNTVCSIQFPLSFKENEYFTHIGKWLED
NNFIGTNTPVDEITIKKSFVDIVVQNPAFEPLREDERYNLLVKKLKEKLGEKK

Sequences:

>Translated_373_residues
MRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELLGYSPQLTKEDIKKIY
SKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPFLLSIIQLLLNHSNLIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNA
NTMEALAEMALGNSEEVIRLLDNKLDPYRGDDVILINAYQMQGKTAEANKVNQILLYNNVINTLALLNNYLSLNMMDPVL
FEKIYSQGIQIIDSFQLKEILTNDVFAIHIIAAQGYLITQNKEKAIDALERYMNTVCSIQFPLSFKENEYFTHIGKWLED
NNFIGTNTPVDEITIKKSFVDIVVQNPAFEPLREDERYNLLVKKLKEKLGEKK
>Mature_373_residues
MRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELLGYSPQLTKEDIKKIY
SKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPFLLSIIQLLLNHSNLIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNA
NTMEALAEMALGNSEEVIRLLDNKLDPYRGDDVILINAYQMQGKTAEANKVNQILLYNNVINTLALLNNYLSLNMMDPVL
FEKIYSQGIQIIDSFQLKEILTNDVFAIHIIAAQGYLITQNKEKAIDALERYMNTVCSIQFPLSFKENEYFTHIGKWLED
NNFIGTNTPVDEITIKKSFVDIVVQNPAFEPLREDERYNLLVKKLKEKLGEKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42993; Mature: 42993

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50943 HTH_CROC1 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNIS
CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCEEECCCHHHHHCCC
VDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPFLLSIIQLL
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNHSNLIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNANTMEALAEMALGNSEEVIRL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCHHHHHHH
LDNKLDPYRGDDVILINAYQMQGKTAEANKVNQILLYNNVINTLALLNNYLSLNMMDPVL
HHCCCCCCCCCCEEEEEEEECCCCCCCCHHHCEEEHHHHHHHHHHHHHHHHHHCCCCHHH
FEKIYSQGIQIIDSFQLKEILTNDVFAIHIIAAQGYLITQNKEKAIDALERYMNTVCSIQ
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEECCHHHHHHHHHHHHHHHHEEE
FPLSFKENEYFTHIGKWLEDNNFIGTNTPVDEITIKKSFVDIVVQNPAFEPLREDERYNL
CCCCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
LVKKLKEKLGEKK
HHHHHHHHHCCCC
>Mature Secondary Structure
MRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNIS
CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCEEECCCHHHHHCCC
VDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPFLLSIIQLL
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNHSNLIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNANTMEALAEMALGNSEEVIRL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCHHHHHHH
LDNKLDPYRGDDVILINAYQMQGKTAEANKVNQILLYNNVINTLALLNNYLSLNMMDPVL
HHCCCCCCCCCCEEEEEEEECCCCCCCCHHHCEEEHHHHHHHHHHHHHHHHHHCCCCHHH
FEKIYSQGIQIIDSFQLKEILTNDVFAIHIIAAQGYLITQNKEKAIDALERYMNTVCSIQ
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEECCHHHHHHHHHHHHHHHHEEE
FPLSFKENEYFTHIGKWLEDNNFIGTNTPVDEITIKKSFVDIVVQNPAFEPLREDERYNL
CCCCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
LVKKLKEKLGEKK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA