Click here to switch to the map view.

The map label for this gene is ydeL [H]

Identifier: 148378640

GI number: 148378640

Start: 735716

End: 737125

Strand: Reverse

Name: ydeL [H]

Synonym: CBO0640

Alternate gene names: 148378640

Gene position: 737125-735716 (Counterclockwise)

Preceding gene: 148378647

Following gene: 148378639

Centisome position: 18.96

GC content: 45.67

Gene sequence:

>1410_bases
ATGCTGTACATTGACCGTGGGAGCAATATACCCATATATCAGCAAATTTATGAACAAATGAAACGGGACATTATAAGCGG
AAATTTACCTGTGGAATCACGCGTCATCTCCACACGAGTGCTGGCCAGCGAATTGCAGGTCGGCAGAAACTCGGTAGAAA
ATGCCTATGATCAACTTAGATTGGAAGGATATATCACGAGTATACCGGGGTCTGGGTATATCGTGAACAAGTTGGAGTTT
GATTTGATTCAGAAATCACCCAAGGAGCAACGGCAAAGCAAGCTGTTGACGGAACATCTCGCCGTGCTCCCCGATAAAAT
CAAATACAGCTTTCAATATGGCGAGCTTGATGAAACCAATTTTCCAAAGAAGCTCTGGCGGACGTATGTGGCGAACGTTC
TGGATGAACCGCTGGCACATTCAATGCACAGTTACGGAGATGGGAAAGGTGATCCTCAGTTGCGCCAGCAGATAAAGCAA
TATCTTTATCACAGCCGGGGAGTACAATGCGAAACAGAACAGATTATCCTTTGCAGCGGTACGCAGTCTGCATTGGAGAC
CATTATAAGAATTTTTTCGGGCAAGAAAGCCGTAGCGATGGAAGAACCATGTTATGACGGTGCAAGAGCAGTATTTCAAA
GCAACGGCTTTAAAATACTGCCTGTTCCGGTTCGTGAAGACGGCATTGATTTACAAAAACTTTCGTCACAATCGATTCCA
ATGGTTTATCTCTCTCCCTCACACCAGTTCCCGACAGGGGCGGTTATGCCTATTCATAACCGGATGGAGGTATTAAATCT
TGCACACCAGCGAGACATGATGATTATTGAGGATGACTACGACAGCGAGTTTCGGTACAAGGGAAGACCCATTCCGTCAC
TGCAATCTATCGATCAAGCTGGGCGCGTGATCTATGTTGGGACTTTTTCTAAGGCTTTATCACCGGGGCTGCGAATATCC
TACTTGGTGTTGCCAACTTGGCTATTAGCTGCTTATCAGGAGAAATACAGAGGATATCAATGCACGATTCCGCTGATTGA
GCAAAAGGTACTCCTACATTTCATGCAAGACGGGCATTGGGAAAAACATATCCGCAGAGTTTGCCTGAGTCAGAAAAGAA
AGCATGATACCCTGATTGTCGCTATCCAGCAGATCATAGGCGACCGAGTTCGGATTTACGGTCATCATGCCGGGTTGCAC
ATATTACTTGAGTTTGTGGATGAACAGCAAGAGGACACTCTTGTACAAAAAGCTATGCGGTATGGTGTTCAGGTGCGCCC
AGTATCTCCATTCTGGCTGGAAAAGGGCCGTTATTCGGGCAATGCTGTCGTGCTGGGATATGGAAAGATAAAAGAAAAAG
ATATTGTACCTGCGGTAGAGCTTTTAAACAAGGCATGGTTTGAAGAGTGA

Upstream 100 bases:

>100_bases
TAAGTGTCTTATAGCATAGAGACGATTTAGAACATTTTATAGGATACGGTTGTTTTAAATTGTGTTATAATAATAGAAAA
AATTGTGAGGAGGGTGAAAG

Downstream 100 bases:

>100_bases
ATAGAACCGCATACACCGGCGTTTTTATAACTGAAACTTTTAAAACAGAAGCTTGCTGTACCTCGAATTGAATATCCAAA
ATTGAGAAGAAAGTTACCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQKSPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETNFPKKLWRTYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKAVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMEVLNLAHQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAGRVIYVGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIVAIQQIIGDRVRIYGHHAGLH
ILLEFVDEQQEDTLVQKAMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE

Sequences:

>Translated_469_residues
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQKSPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETNFPKKLWRTYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKAVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMEVLNLAHQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAGRVIYVGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIVAIQQIIGDRVRIYGHHAGLH
ILLEFVDEQQEDTLVQKAMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
>Mature_469_residues
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQKSPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETNFPKKLWRTYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKAVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMEVLNLAHQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAGRVIYVGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIVAIQQIIGDRVRIYGHHAGLH
ILLEFVDEQQEDTLVQKAMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=322, Percent_Identity=23.6024844720497, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI33469970, Length=322, Percent_Identity=23.6024844720497, Blast_Score=79, Evalue=8e-15,
Organism=Escherichia coli, GI1790797, Length=433, Percent_Identity=25.1732101616628, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787710, Length=436, Percent_Identity=23.8532110091743, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6321236, Length=232, Percent_Identity=25, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53817; Mature: 53817

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLR
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LEGYITSIPGSGYIVNKLEFDLIQKSPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETN
EEEEEEECCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCC
FPKKLWRTYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQYLYHSRGVQCETEQIILCSG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TQSALETIIRIFSGKKAVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCC
MVYLSPSHQFPTGAVMPIHNRMEVLNLAHQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQA
EEEECCCCCCCCCCEECCHHHHHHHHHHHHCCEEEEECCCCCCCEECCCCCCCHHHHHHC
GRVIYVGTFSKALSPGLRISYLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHW
CCEEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCH
EKHIRRVCLSQKRKHDTLIVAIQQIIGDRVRIYGHHAGLHILLEFVDEQQEDTLVQKAMR
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHH
YGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
CCCEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLR
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LEGYITSIPGSGYIVNKLEFDLIQKSPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETN
EEEEEEECCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCC
FPKKLWRTYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQYLYHSRGVQCETEQIILCSG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TQSALETIIRIFSGKKAVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCC
MVYLSPSHQFPTGAVMPIHNRMEVLNLAHQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQA
EEEECCCCCCCCCCEECCHHHHHHHHHHHHCCEEEEECCCCCCCEECCCCCCCHHHHHHC
GRVIYVGTFSKALSPGLRISYLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHW
CCEEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCH
EKHIRRVCLSQKRKHDTLIVAIQQIIGDRVRIYGHHAGLHILLEFVDEQQEDTLVQKAMR
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHH
YGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
CCCEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]