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The map label for this gene is trbC [H]

Identifier: 148360851

GI number: 148360851

Start: 620323

End: 620700

Strand: Direct

Name: trbC [H]

Synonym: LPC_2811

Alternate gene names: 148360851

Gene position: 620323-620700 (Clockwise)

Preceding gene: 148360852

Following gene: 295815282

Centisome position: 17.34

GC content: 43.65

Gene sequence:

>378_bases
ATGAATCAGTTAAGCAGTTTTAATCACAAGAAAATTTGGATGATGGGGGCAGTCATATTATTTCTATTTTTAATGACTCA
TCCGGCTAGCGCCTCCACAGCAGGTGGAGGACTTCCATTCGACTCATGGTTAACCAAAATCCAGAAGTCCATTACAGGTC
CATTTGCCTTTAGTGCGGCGATTATTGGTCTGGTTGCTGCCGGTGCCACACTTATTTTTGGTGGTGAATTAAATGGTTTT
ATGCGAACCCTTGTCTTTTTTGTATTGGTGCTTTCATTCCTGGTAGCGGCACAAAATACCATGACAGCGATTACTGGCAA
AGGGGCGGAAATTTCCAAGCCATCTGTTGAGATGACAGCAATCGAGTCTCAGCCATGA

Upstream 100 bases:

>100_bases
CAAGAACGCCAGATGGTCGCTTTGTCAAAGAAATCATATCTGTCGAGGGTTTTAAAAATGGTCAATACAACATCAAGAAA
CTTGTTTAAGGAGAATATGA

Downstream 100 bases:

>100_bases
GCCTTCGCACTATCTCCATTCGTAGATGTGGAAATCGTCCAAGTCTCTTTATGGGCGGAGACCGTGAGCTTGTCATGTTT
TCAGGATTGCTATCAGCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MNQLSSFNHKKIWMMGAVILFLFLMTHPASASTAGGGLPFDSWLTKIQKSITGPFAFSAAIIGLVAAGATLIFGGELNGF
MRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSVEMTAIESQP

Sequences:

>Translated_125_residues
MNQLSSFNHKKIWMMGAVILFLFLMTHPASASTAGGGLPFDSWLTKIQKSITGPFAFSAAIIGLVAAGATLIFGGELNGF
MRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSVEMTAIESQP
>Mature_125_residues
MNQLSSFNHKKIWMMGAVILFLFLMTHPASASTAGGGLPFDSWLTKIQKSITGPFAFSAAIIGLVAAGATLIFGGELNGF
MRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSVEMTAIESQP

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007039 [H]

Pfam domain/function: PF04956 TrbC [H]

EC number: NA

Molecular weight: Translated: 13230; Mature: 13230

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLSSFNHKKIWMMGAVILFLFLMTHPASASTAGGGLPFDSWLTKIQKSITGPFAFSAA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
IIGLVAAGATLIFGGELNGFMRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSVEMTA
HHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEE
IESQP
CCCCC
>Mature Secondary Structure
MNQLSSFNHKKIWMMGAVILFLFLMTHPASASTAGGGLPFDSWLTKIQKSITGPFAFSAA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
IIGLVAAGATLIFGGELNGFMRTLVFFVLVLSFLVAAQNTMTAITGKGAEISKPSVEMTA
HHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEE
IESQP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]