Click here to switch to the map view.

The map label for this gene is 148360260

Identifier: 148360260

GI number: 148360260

Start: 1289410

End: 1291164

Strand: Reverse

Name: 148360260

Synonym: LPC_2195

Alternate gene names: NA

Gene position: 1291164-1289410 (Counterclockwise)

Preceding gene: 148360259

Following gene: 148360262

Centisome position: 36.1

GC content: 41.54

Gene sequence:

>1755_bases
ATGAATTCAAATCAAATATATCACGTGGATTTTAAACAGTCTAAACAGATCAAATCCTTCCCATATGCCGGTGGATGTTT
TCAATTAACCTCAGATGGAGTGATTTTCATTGGTAAGGACAAAGATAATAATGAGCTACCCGCCCGCTGGATTTGCTCTT
CTTTGTATGTAGTAGCTAAAACGCGAGACGCTCATAGTGGTGAATGGGGTAGATTACTCGAATGGCTAGATGATGATGGC
ATTAAACACCAATGGGCGATGCCCTTGGCTTTATTACAAGGCGATTCCAGTGATGTAAGACGCGAGTTAGCCCGATTAGG
ATTAGCAATATCACCAAGCAAAACAGCTCGTGAGTTGTTGGCATCCTACATTCAGGTTTTTCCTATTGAAGATCGCGCTC
GGTGTGTAGATAAATTGGGTTGGTATAAAGAGGTATTTGTTACCGCTAATGAAGCCATTGGCCAATCAGAAGATCAAATC
GTTTTTCAAAATGTTAATAGTTTAGAACCGGCATTGACCACAGCAGGAAGCATTGAGGATTGGCGTAACTCTATCGCAAG
ATTAGCAGAAGGTAATTCTCGTTTAATATTTGCAATCTCCACTGCATTCGCACCAAGCCTAGCTGATCTTACAGGCGAGG
ATTCTGGAGGATTTCATTTCAGAGGTGCATCATCCTCAGGCAAAACAACCGCTTTAAAAGTAGCAGCTTCTGTTTGGGGT
AAGCCAGAAAGTTATATTCGCTTATGGCGAAGCACTGCAAATGGCTTAGAGGGATTAGCTGCTCTTCATAATGATGGATT
ATTAATCCTAGATGAGCTTAGCCAAATGGATCCTAAAGAAGCCGGAGAATGCGCCTATTTACTTGCTAATGGTCAAGGTA
AAACACGCGCATCTCGTTGTGGTACAGCACGTCAATCAATGCGTTGGTCATTACTTTTTTTATCAGCAGGCGAAGAGTCG
TTAACCGCATTAATGGCTAAAGCTGGACAACGATGCAATGCTGGTCAAGAAATTCGTTTAGCTGATGTTGAGGCCGATGC
AGGTGCTCAGATGGGCATCTTTGAACAGTTACATGATTATATAAACCCTGCCTCAATGGCTATCGCATTAAAAGAGGCTT
CGAATCAATATCATGGAACAGTTGGAATTGCATGGCTCTACAAGATTGTTCAGCATCGCACAGAACTAATTCCCCAACTC
GCAAATAAAATCCAACAATTTGTAACAAAAGTCACTAAACCTGGACATTCTGGCCAGATCCAACGAGTAGCTAGACGTTT
TGCTTTAGTTGCTATGGCAGGGGAAGTCGCTACTCATTATGATTTGACAGGTTGGAAAAGAGGTACAGCATGCCAAGCAG
CGGAGAAATGCTTCAATGTATGGTTAGAAAATTTTGGTGAGCATGGCAATAGAGAGGATCGAGCCATCCTATCGCAAGTT
CGTGCCTTCTTTGAAAAAGAAGGATCGAGTCGATTTGAAAGCGAAAATCATCCTAATAGTGAACGCGTTTATAATAGAGC
TGGATTTTTTCACACAGATGGCGCTGGTTTTCGAATTTTTATGGTTTTATCTGAGGTTTATAGGAAGGAGATCTGCCAAG
GATTTGAACCTAAAATGGTGAATAAAGTGCTTATTAATGCTGGCTGGATAGTACCTGGTAATGATGGAAAAGCATCTCAA
AAACGAAGGATTAAAGGAGTTGGCATTCCTAGATGTTATGTGTTTACTGAGAAAGTCTGGTCTGACGAGTTTTAA

Upstream 100 bases:

>100_bases
AACGTCCTTCAAGATGCTGTTTAGCAGCTCTTTGATTAAGCCTTGATTGATTGGAAGGTGGTGGAACACCTTCCTGTGAA
CGTTGTTGGAGAAATAGAAA

Downstream 100 bases:

>100_bases
TTGTCCCACCCGTTCCACTATTAATCTTGATAGTGGAACATTTACACTTCAGTAACAGTAAGAGTTTCCCACTTGTCCCA
TTTGTACCACTTAAATTTTA

Product: inner membrane protein

Products: NA

Alternate protein names: Prophage Primase; Superfamily II Helicase; Bifunctional DNA Primase/Polymerase; DNA/RNA Helicase; DNA Helicase Inner Membrane Protein; Conserved Domain Protein; Inner Membrane; Zinc Finger CHC2-Family Protein; Primase C 2 Family; Inner Membrane Protein Phage Origin; Pathogenicity Island Protein; DNA Primase TraC

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MNSNQIYHVDFKQSKQIKSFPYAGGCFQLTSDGVIFIGKDKDNNELPARWICSSLYVVAKTRDAHSGEWGRLLEWLDDDG
IKHQWAMPLALLQGDSSDVRRELARLGLAISPSKTARELLASYIQVFPIEDRARCVDKLGWYKEVFVTANEAIGQSEDQI
VFQNVNSLEPALTTAGSIEDWRNSIARLAEGNSRLIFAISTAFAPSLADLTGEDSGGFHFRGASSSGKTTALKVAASVWG
KPESYIRLWRSTANGLEGLAALHNDGLLILDELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLSAGEES
LTALMAKAGQRCNAGQEIRLADVEADAGAQMGIFEQLHDYINPASMAIALKEASNQYHGTVGIAWLYKIVQHRTELIPQL
ANKIQQFVTKVTKPGHSGQIQRVARRFALVAMAGEVATHYDLTGWKRGTACQAAEKCFNVWLENFGEHGNREDRAILSQV
RAFFEKEGSSRFESENHPNSERVYNRAGFFHTDGAGFRIFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQ
KRRIKGVGIPRCYVFTEKVWSDEF

Sequences:

>Translated_584_residues
MNSNQIYHVDFKQSKQIKSFPYAGGCFQLTSDGVIFIGKDKDNNELPARWICSSLYVVAKTRDAHSGEWGRLLEWLDDDG
IKHQWAMPLALLQGDSSDVRRELARLGLAISPSKTARELLASYIQVFPIEDRARCVDKLGWYKEVFVTANEAIGQSEDQI
VFQNVNSLEPALTTAGSIEDWRNSIARLAEGNSRLIFAISTAFAPSLADLTGEDSGGFHFRGASSSGKTTALKVAASVWG
KPESYIRLWRSTANGLEGLAALHNDGLLILDELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLSAGEES
LTALMAKAGQRCNAGQEIRLADVEADAGAQMGIFEQLHDYINPASMAIALKEASNQYHGTVGIAWLYKIVQHRTELIPQL
ANKIQQFVTKVTKPGHSGQIQRVARRFALVAMAGEVATHYDLTGWKRGTACQAAEKCFNVWLENFGEHGNREDRAILSQV
RAFFEKEGSSRFESENHPNSERVYNRAGFFHTDGAGFRIFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQ
KRRIKGVGIPRCYVFTEKVWSDEF
>Mature_584_residues
MNSNQIYHVDFKQSKQIKSFPYAGGCFQLTSDGVIFIGKDKDNNELPARWICSSLYVVAKTRDAHSGEWGRLLEWLDDDG
IKHQWAMPLALLQGDSSDVRRELARLGLAISPSKTARELLASYIQVFPIEDRARCVDKLGWYKEVFVTANEAIGQSEDQI
VFQNVNSLEPALTTAGSIEDWRNSIARLAEGNSRLIFAISTAFAPSLADLTGEDSGGFHFRGASSSGKTTALKVAASVWG
KPESYIRLWRSTANGLEGLAALHNDGLLILDELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLSAGEES
LTALMAKAGQRCNAGQEIRLADVEADAGAQMGIFEQLHDYINPASMAIALKEASNQYHGTVGIAWLYKIVQHRTELIPQL
ANKIQQFVTKVTKPGHSGQIQRVARRFALVAMAGEVATHYDLTGWKRGTACQAAEKCFNVWLENFGEHGNREDRAILSQV
RAFFEKEGSSRFESENHPNSERVYNRAGFFHTDGAGFRIFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQ
KRRIKGVGIPRCYVFTEKVWSDEF

Specific function: Unknown

COG id: COG5519

COG function: function code L; Superfamily II helicase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64809; Mature: 64809

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNQIYHVDFKQSKQIKSFPYAGGCFQLTSDGVIFIGKDKDNNELPARWICSSLYVVAK
CCCCEEEEEECCCCCCHHCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHEEEEE
TRDAHSGEWGRLLEWLDDDGIKHQWAMPLALLQGDSSDVRRELARLGLAISPSKTARELL
CCCCCCCCHHHHHHHHCCCCCCCHHHCCHHEECCCCHHHHHHHHHCCCCCCCCHHHHHHH
ASYIQVFPIEDRARCVDKLGWYKEVFVTANEAIGQSEDQIVFQNVNSLEPALTTAGSIED
HHHHHCCCCCHHHHHHHHHCCHHHHEEEEHHHCCCCCCCEEECCCCCCCHHHHCCCCHHH
WRNSIARLAEGNSRLIFAISTAFAPSLADLTGEDSGGFHFRGASSSGKTTALKVAASVWG
HHHHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
KPESYIRLWRSTANGLEGLAALHNDGLLILDELSQMDPKEAGECAYLLANGQGKTRASRC
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCEEEEEECCCCCCHHHHH
GTARQSMRWSLLFLSAGEESLTALMAKAGQRCNAGQEIRLADVEADAGAQMGIFEQLHDY
HHHHHCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
INPASMAIALKEASNQYHGTVGIAWLYKIVQHRTELIPQLANKIQQFVTKVTKPGHSGQI
CCHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
QRVARRFALVAMAGEVATHYDLTGWKRGTACQAAEKCFNVWLENFGEHGNREDRAILSQV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RAFFEKEGSSRFESENHPNSERVYNRAGFFHTDGAGFRIFMVLSEVYRKEICQGFEPKMV
HHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHH
NKVLINAGWIVPGNDGKASQKRRIKGVGIPRCYVFTEKVWSDEF
HHHHHCCCEEEECCCCCCHHHHHHCCCCCCEEEEEEHHHCCCCC
>Mature Secondary Structure
MNSNQIYHVDFKQSKQIKSFPYAGGCFQLTSDGVIFIGKDKDNNELPARWICSSLYVVAK
CCCCEEEEEECCCCCCHHCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHEEEEE
TRDAHSGEWGRLLEWLDDDGIKHQWAMPLALLQGDSSDVRRELARLGLAISPSKTARELL
CCCCCCCCHHHHHHHHCCCCCCCHHHCCHHEECCCCHHHHHHHHHCCCCCCCCHHHHHHH
ASYIQVFPIEDRARCVDKLGWYKEVFVTANEAIGQSEDQIVFQNVNSLEPALTTAGSIED
HHHHHCCCCCHHHHHHHHHCCHHHHEEEEHHHCCCCCCCEEECCCCCCCHHHHCCCCHHH
WRNSIARLAEGNSRLIFAISTAFAPSLADLTGEDSGGFHFRGASSSGKTTALKVAASVWG
HHHHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
KPESYIRLWRSTANGLEGLAALHNDGLLILDELSQMDPKEAGECAYLLANGQGKTRASRC
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCEEEEEECCCCCCHHHHH
GTARQSMRWSLLFLSAGEESLTALMAKAGQRCNAGQEIRLADVEADAGAQMGIFEQLHDY
HHHHHCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
INPASMAIALKEASNQYHGTVGIAWLYKIVQHRTELIPQLANKIQQFVTKVTKPGHSGQI
CCHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
QRVARRFALVAMAGEVATHYDLTGWKRGTACQAAEKCFNVWLENFGEHGNREDRAILSQV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RAFFEKEGSSRFESENHPNSERVYNRAGFFHTDGAGFRIFMVLSEVYRKEICQGFEPKMV
HHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHH
NKVLINAGWIVPGNDGKASQKRRIKGVGIPRCYVFTEKVWSDEF
HHHHHCCCEEEECCCCCCHHHHHHCCCCCCEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA