| Definition | Legionella pneumophila str. Corby chromosome, complete genome. |
|---|---|
| Accession | NC_009494 |
| Length | 3,576,470 |
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The map label for this gene is secD [H]
Identifier: 148359572
GI number: 148359572
Start: 2354919
End: 2356775
Strand: Reverse
Name: secD [H]
Synonym: LPC_1484
Alternate gene names: 148359572
Gene position: 2356775-2354919 (Counterclockwise)
Preceding gene: 148359573
Following gene: 148359571
Centisome position: 65.9
GC content: 40.33
Gene sequence:
>1857_bases ATGCAAAATAAATATCCTCTATGGAAAAATCTAATGCTGATAGTGATTGCAGTCATTGGATTTATTTACGCTATACCGAA TTTGTATACGGAAAATCCCGTTGTTCAAATTTCTGCGGGTACAGATGAAGATACAGAGACAATAAAAAATCAGGTAGAGT CCATATTAAAAAATGCCAATATGGATTATAAATCCCTGGTTGTGGAGAGGGATGGGGTAGAGGTAGTATTTTCTTCTACT GATTCTCAATTATTAGCTCGTGATGTTATCAAGAATAGCCTGGGATCTGATTACACAGTGGCTTTGAATTTAGCGCCTTC CACACCAGCTTGGCTTGAAGCAATTCATGCTGACCCTATGAAGCAAGGGTTGGACTTAAGAGGCGGTGTTCATTTTCTTC TTGAAGTGGATGTCGAGAGTGTTATAAGTCGGCGTTATGAAGGAATAATGAAAAATATTGGCCAAGAATTACGTGAAGCA GGTATTCGTTATTCAGGCATACGTTATTTATCAGATAAAGGGATTGAATTGCGTTTCAGAGATTCTGACTCAATGGAAAA TGCTTTAGTTGAGTTAAGACAAAAAATATCTGATGTGGTTTTTGTTAAAACTAAAACACAAAATTCAATTTTAGGCGCCA TTTCTCCAGCAGAATTAAATTCCATAAGACAAAATACTATTGAGCAGACAATGAGTATCTTGAGAAATCGTGTCAACGAG CTCGGAGTTGGTGAAGCTGTCGTACAACAACAAGGGGCGACTCGAGTCGCCGTAGATTTGCCAGGCATTCAAGACGCGGC CAGAGCAAAACAAATACTTGGTGGTACTGCTACTTTGGAATTTCATTTGGTTGATCAGGAAAATGACCCTTTCATTGCAA AGCAAACCGGCGTAGTTCCTGTCAATGATAAGCTGTATATGATGGATGGTCATCCTATCTTATTAAAGAGACAGGTCGTT TTAAGTGGCGACTCTATTACGTCAGCAGTGTCCAGTTTTGATCAACAAACGGCTTCTCCATCTGTTCAAATTCAATTGGG TGGCGGGGGCGAGAGCTTGTTTACTAAAGTTACGCGTGAAAATATCGGTAAGCGCATGGCGATCGTTTTTGTGGAAACCA AAACGACTACACAAACAATTAATGGCGAGGAAAAACGAGTAACAAAGAAAGAAGAGCGAGTTATTAGTGCGCCAGTGATT CAAAATGCTTTAGGCAGCAATTTCCAGATTACCGGACTGACTGATAGCAAAGAAGCAAGTAATCTGGCTTTATTATTAAG AGCTGGCGCTTTACCTGCTGCAATCTATCCTGTTGAAGAGCGTACCGTTGGCCCAACTCTTGGAAAGGAAAATATTCGCC GAGGACTTATTTCCCTGGAAGTTGGTATGGGTTTAATTTTGGTACTAATGCTCGTGTATTATCATTTTTTTGGTTTAATT GCTGATATTGCATTGATGCTGAATTTAGTTTTTCTTTGCGCATTGTTGTCCATAATTGATGCGACACTGACTTTACCGGG AATTGCGGGGATTGTTTTGACCGTGGGCATGGCTGTTGATGCCAATGTCCTGATTTATGAGCGGATTAGAGAGGAGTTGC GCAATGGATTGTCTCCTCAAGCTGCGATTCATGCAGGATATGAGCGAGCATTTTCAACTATATTGGATGCCAACGTGACT ACTTTAATTGTAGCTATCATTTTATTTGCGGTGGGCACAGGACCGGTGCGCGGGTTTGCGGTTGTCCTTTCTCTGGGTTT GTTAACTTCTATGTTAACTGGTATTACTTACACCAGAGCTATTGTGAATTGGTATTATGGTGGGCGTAATGTCAAAAAAT TATCTATAGGCATATAA
Upstream 100 bases:
>100_bases AGCAGAAGGTATAGAAATTAATTTGCAAAAAGGCGCAGTTACTGCAGTATTACCAAAAGGCACTATCAAATCACTTTAAG TTAGGCATAGGGAATCAGAA
Downstream 100 bases:
>100_bases GGCGAGACTCAGATGGAATTTTTTAATCCAAATTCAAAAATAGATTTTATGGGCGCGCGCCGTTGGACTGCATTGTTTTC TATATTAATTTTTGTAGTGT
Product: preprotein translocase subunit SecD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 618; Mature: 618
Protein sequence:
>618_residues MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI
Sequences:
>Translated_618_residues MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI >Mature_618_residues MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=620, Percent_Identity=48.0645161290323, Blast_Score=558, Evalue=1e-160,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 67346; Mature: 67346
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNAN CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC MDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPM CCHHHHEEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHH KQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGIRYSGIRYLSDKGIELRFR HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC DSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE CCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVP CCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEECCCEEE VNDKLYMMDGHPILLKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRE CCCEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH NIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEAS HCCCEEEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC NLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI CEEEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH AAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IVNWYYGGRNVKKLSIGI HHHHHCCCCCEEEEECCC >Mature Secondary Structure MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNAN CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC MDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPM CCHHHHEEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHH KQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGIRYSGIRYLSDKGIELRFR HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC DSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE CCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVP CCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEECCCEEE VNDKLYMMDGHPILLKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRE CCCEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH NIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEAS HCCCEEEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC NLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI CEEEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH AAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IVNWYYGGRNVKKLSIGI HHHHHCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]