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The map label for this gene is intF [H]

Identifier: 148359487

GI number: 148359487

Start: 2254827

End: 2256068

Strand: Reverse

Name: intF [H]

Synonym: LPC_1395

Alternate gene names: 148359487

Gene position: 2256068-2254827 (Counterclockwise)

Preceding gene: 148359488

Following gene: 148359486

Centisome position: 63.08

GC content: 38.57

Gene sequence:

>1242_bases
ATGGAAAATATCAAAGCTATCAAACTCACCAAAACGGTGGTTGATAAAATCAAACCAGTGGAAGGAAAAGATCAAACGTT
TTATCGAGATGAGCAGTTAAAAGGCTTTGCACTTCGGGTGACTTCAAGCGGAGTAAAAAGCTTTGTGGTAGAAACCCGTG
TCGCTAATAAGGTGAAACGCATTACCTTGGGTAAATATGGCCAGATAACTGCCGAGGAAGCACGCAAGCAAGCGAAGCAT
TTATTGGGTCAGATTGCGAAAGGGGATAATCCGATCGCTGAAAAAAAGATAAACAAAATAAAATCGATAACTTTGAAGGA
AGCGTTTCATGATTATCTTAAAGCCCGCAAAGACTTGAAGATACTGACTATTAAAGATTATCAATCGATTCTAAAGCAAG
TGATTTCTGATTGGTTTGATAAGCCTCTAATGAATATCACAAGAGAAATGATTGCCAAACGTCACGCACAATATGGTCAA
ACAAACAGTAAAGCACGAGCTAATTATGCCATGCGTGTATTGCGGGCTGTTTTTAACTTTGCAGCACATGAATATCAGCT
TGAAGATGGTCAACCCATCATTGCCATTAACCCTGTAGAATATTTGTCTCATACTCGAAGTTGGTACAGAGTAGATCGTA
AAAATACCATGATCAAAAGTCACCAGCTGGCAGCATGGCATGAAGGTTTAACAAGACTCGGTGAACAAGAAGATTATTCC
CAGGCTATGATGTGGAAAGACTATTTCTTACTGGTTCTCTTCACTGGTTTAAGGAGAACAGAAGCAGCATCCTTATGTTG
GAAGGATGTTGATTTTAAAGACAAGACTTTCACTGTACAGGATACCAAAAATAGGGAGGTTCATACTTTGCCTATGTCTG
ATTTTCTCTATGAATTATTCTTACGAAGAAAACAATTTAAGATGAATGAATTTGTATTCCCGTCACCTAGTAAAACAGGT
CATGTCATAGATCCCAGAAAAGCTATGCTCAAAGTGGCCGAATTATCTGGCGTCTCTTTTACTGTTCATGATTTAAGGCG
AACCTTTGCTACGACTGCAGAAAGTCTGGATTTACCAGCGTATGCTTTAAAACGACTGTTAAATCATAAAATGAATAATG
ACGTAACTGCAGGTTATATTATGCGAGATGTGGAACGCTTACGAAAACCGATGCAGAGGATTACTGATTTTTTGATCAGG
CAGATGGCCGGTAGTGTAGAAAATATTGTAGCGTTAAATTAA

Upstream 100 bases:

>100_bases
TAGATTTTTTAACTTTTATTATGTTTTAAATAATCTGTCTACATGGTGTCTACATGGTGTCTACATGGAATTTAAAACGT
AATTTTTTCTAAGGTGTTTT

Downstream 100 bases:

>100_bases
ATGTCCAACTTCATGAATCTTTTGAAGAAGGAGAATATTATATTTGACGGACATGATAATTCTTAGTACAATTATAGTAC
TACTTCCCCTAGGACTTTTC

Product: phage related integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MENIKAIKLTKTVVDKIKPVEGKDQTFYRDEQLKGFALRVTSSGVKSFVVETRVANKVKRITLGKYGQITAEEARKQAKH
LLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKARKDLKILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQ
TNSKARANYAMRVLRAVFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQEDYS
QAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFLYELFLRRKQFKMNEFVFPSPSKTG
HVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESLDLPAYALKRLLNHKMNNDVTAGYIMRDVERLRKPMQRITDFLIR
QMAGSVENIVALN

Sequences:

>Translated_413_residues
MENIKAIKLTKTVVDKIKPVEGKDQTFYRDEQLKGFALRVTSSGVKSFVVETRVANKVKRITLGKYGQITAEEARKQAKH
LLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKARKDLKILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQ
TNSKARANYAMRVLRAVFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQEDYS
QAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFLYELFLRRKQFKMNEFVFPSPSKTG
HVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESLDLPAYALKRLLNHKMNNDVTAGYIMRDVERLRKPMQRITDFLIR
QMAGSVENIVALN
>Mature_413_residues
MENIKAIKLTKTVVDKIKPVEGKDQTFYRDEQLKGFALRVTSSGVKSFVVETRVANKVKRITLGKYGQITAEEARKQAKH
LLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKARKDLKILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQ
TNSKARANYAMRVLRAVFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQEDYS
QAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFLYELFLRRKQFKMNEFVFPSPSKTG
HVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESLDLPAYALKRLLNHKMNNDVTAGYIMRDVERLRKPMQRITDFLIR
QMAGSVENIVALN

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=441, Percent_Identity=25.8503401360544, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788690, Length=407, Percent_Identity=24.5700245700246, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47886; Mature: 47886

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIKAIKLTKTVVDKIKPVEGKDQTFYRDEQLKGFALRVTSSGVKSFVVETRVANKVKR
CCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
ITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKARKDLK
HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
ILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRAVFNF
EEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQEDYS
HHHHEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFLYELF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCHHHHHHHHH
LRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESLDLPA
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCH
YALKRLLNHKMNNDVTAGYIMRDVERLRKPMQRITDFLIRQMAGSVENIVALN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECC
>Mature Secondary Structure
MENIKAIKLTKTVVDKIKPVEGKDQTFYRDEQLKGFALRVTSSGVKSFVVETRVANKVKR
CCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
ITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKARKDLK
HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
ILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRAVFNF
EEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQEDYS
HHHHEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFLYELF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCHHHHHHHHH
LRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESLDLPA
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCH
YALKRLLNHKMNNDVTAGYIMRDVERLRKPMQRITDFLIRQMAGSVENIVALN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]