Click here to switch to the map view.

The map label for this gene is tolB [H]

Identifier: 148359107

GI number: 148359107

Start: 1805105

End: 1806364

Strand: Reverse

Name: tolB [H]

Synonym: LPC_0995

Alternate gene names: 148359107

Gene position: 1806364-1805105 (Counterclockwise)

Preceding gene: 148359108

Following gene: 148359106

Centisome position: 50.51

GC content: 43.65

Gene sequence:

>1260_bases
GTGTTCAATCGAATTATTTCACTTTTCTTGCTGTTATTTACCGGTCAAGTGATTGCTCTTGATTTGGAACTAACTCAAGG
AATTAATTCAGCCCTGCCTATAGCCATCAATTCTTTTGGCTCAGACGCGGCGGCTCAGGAAATAGGAAATGTCATAGAGA
ATGATTTGACTATATCAGGACAATTTAAAATTATCTCTGGACCACAAGGCGCGAATTCTCAATCTTCCGTGAGTACATTA
CGTCAACTTGGCGCTGACAGTGTAGTCACTGGCCGAGTGAATCAGGTTGGTAACCGGATTGAAGTGAGCTTTACTTTGGC
CGATGCCGTAGCCAATGGCAATATTTTGTTGACAAAAACTTTTCAGATCAATGCCAATCAGGTAAGAGCTTTGGCTCATC
ATATTAGTGATGAGGTATACCAAAAACTGACTGGAGAACGGGGGATTTTCTCCACGAGGATAGCTTATATTTCGGTACAA
AGAAACGGAGGAAGGTCTCGCTACTCCCTGGAGGTTGCTGATGCTGACGGACATAATCCTCAAAGCTTACTCGTCTCTTC
AGAGCCTATTATGTCACCTTCATGGTCACCCAATGGAAAGTCAATATCCTATGTTTCTTTTGAAAAGAAAAAAGCTGAAA
TTTTTACCGTCTCTGTTGAAACAGGACAGCGTCGCCTAATTACGAGCTTCCCAGGAATTAATGGAGCGCCCGCATGGTCA
CCTGACGGTCAGCATTTGGCAGTTGTATTATCCAAAAGCGGTACACCCAAAATTTACGATGTTGATTTGAGCAGCGGTTC
TATGAAACAGCTTACTTTTGGCAATTCTATCGATACGGAACCACGTTATTCTCCTGATGGTCGCAGTTTGCTGTTCACTT
CAGGGAGGGGCGGGTCACCACAAGTATATCGCTTATCATTGGCCGATGGCCAAATAAGTCGAGTCACTTTCGAAGGCAAT
TATAATGCCCGTGCCTCCTACACTCCAGATATGAAGCATATCGTCATGCTACACAGGGAAGATAGACAATTTAATATTGG
TGTACAAAATACAGGTGGTGGCCCGATTTCCAATTTAACCTTTTCTGGCCTTGATGAATCACCATCAGTCTCTCCGAATA
GTCGTTTAGTGCTTTATGCTACCCGTTATCAGAACAGAGGGGTTTTAGGCATTGTGTCAATTGACGGGAGAATTAGAATG
AGACTTCCTGCTCGTGAAGGAGATGTTCAAGAACCCGCTTGGTCCCCTTACCTGAGTTAA

Upstream 100 bases:

>100_bases
AGGCTTCACCACTTCCCGTGCCTAAAGACGTTGAAACATTTAATTTGTTTCGCGATATCAGTTTAACCGTTCGTCCAGAA
CAAGTTAGGGGGTAAAGCTC

Downstream 100 bases:

>100_bases
GAATGATAAGAAGCATATTGGTATTGTTTTTTTTATTTATTGCTAATGCTGGTTATGCATGGAACGCGATAGGGCACCAA
CTGGTAGCCCAGATCGCATA

Product: TolB colicin import protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MFNRIISLFLLLFTGQVIALDLELTQGINSALPIAINSFGSDAAAQEIGNVIENDLTISGQFKIISGPQGANSQSSVSTL
RQLGADSVVTGRVNQVGNRIEVSFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQ
RNGGRSRYSLEVADADGHNPQSLLVSSEPIMSPSWSPNGKSISYVSFEKKKAEIFTVSVETGQRRLITSFPGINGAPAWS
PDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGN
YNARASYTPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQNRGVLGIVSIDGRIRM
RLPAREGDVQEPAWSPYLS

Sequences:

>Translated_419_residues
MFNRIISLFLLLFTGQVIALDLELTQGINSALPIAINSFGSDAAAQEIGNVIENDLTISGQFKIISGPQGANSQSSVSTL
RQLGADSVVTGRVNQVGNRIEVSFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQ
RNGGRSRYSLEVADADGHNPQSLLVSSEPIMSPSWSPNGKSISYVSFEKKKAEIFTVSVETGQRRLITSFPGINGAPAWS
PDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGN
YNARASYTPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQNRGVLGIVSIDGRIRM
RLPAREGDVQEPAWSPYLS
>Mature_419_residues
MFNRIISLFLLLFTGQVIALDLELTQGINSALPIAINSFGSDAAAQEIGNVIENDLTISGQFKIISGPQGANSQSSVSTL
RQLGADSVVTGRVNQVGNRIEVSFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQ
RNGGRSRYSLEVADADGHNPQSLLVSSEPIMSPSWSPNGKSISYVSFEKKKAEIFTVSVETGQRRLITSFPGINGAPAWS
PDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGN
YNARASYTPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQNRGVLGIVSIDGRIRM
RLPAREGDVQEPAWSPYLS

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

Organism=Escherichia coli, GI1786961, Length=427, Percent_Identity=39.8126463700234, Blast_Score=293, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 45388; Mature: 45388

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRIISLFLLLFTGQVIALDLELTQGINSALPIAINSFGSDAAAQEIGNVIENDLTISG
CHHHHHHHHHHHHCCCEEEEEEEHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCEEEEE
QFKIISGPQGANSQSSVSTLRQLGADSVVTGRVNQVGNRIEVSFTLADAVANGNILLTKT
EEEEEECCCCCCCHHHHHHHHHCCCCCEEECCHHHCCCEEEEEEEEEHHHCCCCEEEEEE
FQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRSRYSLEVADADGHNP
EEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCC
QSLLVSSEPIMSPSWSPNGKSISYVSFEKKKAEIFTVSVETGQRRLITSFPGINGAPAWS
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCC
PDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSP
CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
QVYRLSLADGQISRVTFEGNYNARASYTPDMKHIVMLHREDRQFNIGVQNTGGGPISNLT
EEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCE
FSGLDESPSVSPNSRLVLYATRYQNRGVLGIVSIDGRIRMRLPAREGDVQEPAWSPYLS
ECCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFNRIISLFLLLFTGQVIALDLELTQGINSALPIAINSFGSDAAAQEIGNVIENDLTISG
CHHHHHHHHHHHHCCCEEEEEEEHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCEEEEE
QFKIISGPQGANSQSSVSTLRQLGADSVVTGRVNQVGNRIEVSFTLADAVANGNILLTKT
EEEEEECCCCCCCHHHHHHHHHCCCCCEEECCHHHCCCEEEEEEEEEHHHCCCCEEEEEE
FQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRSRYSLEVADADGHNP
EEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCC
QSLLVSSEPIMSPSWSPNGKSISYVSFEKKKAEIFTVSVETGQRRLITSFPGINGAPAWS
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCC
PDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSP
CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
QVYRLSLADGQISRVTFEGNYNARASYTPDMKHIVMLHREDRQFNIGVQNTGGGPISNLT
EEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCE
FSGLDESPSVSPNSRLVLYATRYQNRGVLGIVSIDGRIRMRLPAREGDVQEPAWSPYLS
ECCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA