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The map label for this gene is yafC [H]

Identifier: 148358200

GI number: 148358200

Start: 61029

End: 61937

Strand: Direct

Name: yafC [H]

Synonym: LPC_0061

Alternate gene names: 148358200

Gene position: 61029-61937 (Clockwise)

Preceding gene: 148358192

Following gene: 148358201

Centisome position: 1.71

GC content: 38.83

Gene sequence:

>909_bases
ATGATAAATTTTTCACAAATCCAGGTGTTTATTGCAATTGTTGAATCTGGTGGATTTATTGCTGCTGGAGAGAAGATGCA
TCGTTCACAGCCGGCAATAACTAATGCCATAAAAAAATTGGAGTCCAGCCTGGGCTTCGAACTGTTTGATAGAAAAGTAT
ACCGACCTCAACTCACTGCGAAAGGTAAAGCTTTTTATCAAAAAGCAAGAGAAGTGGCCGCTCAATTTATGCAACTGGAA
AATAGTGCTGAAACATTGAGATCCGGAGTAGAAACACAATTTTCTATAGATCTCGATATTGCTTTACCATTGCCAGGATA
TGCTCCGCTTATTCAATCTTTCATAAGACAATATCCCGAAACTTGTTTTTCACTAAGTAACAATACTTTTGTTCGATGTC
TTGAGCGCCTGGAAAGAAGAGAGTGCCATTTATGTATAGCTGCAAGCCATATTCGTTCTCCACAGATAGAATATTTGCGT
ATGCCTTCCATACGAATGATTCCTGTTGCGAGCAGGGACTATTATGACCAGCATAAAGAACGAATAAATAATCCCAAGCT
GGGAATATACTGCATGCAAATTATGATAGCTGGCACGCAACAGGAATTATATCAACTCAAGATTGAGCCATTAAGTAATT
CTATGCCCAAATGGTTCGTGGGTGATATGTATATTCGTAAACAACTGATTTTATCAGGTATGGGTATTGGCCGTTTACCG
GATCATCTGGTTGAAAAGGAGTTGGCAGAGGGCTCTTTGGTTCAGTTAAATACCAGGGATTATGTAGCCGTTACTATGGA
TATTTATGCTATGCGGTTAAATAATCAAGAGCATGGCATAGTCTCCAATTATGCTTGGCAATCACTAAAAAGTTATGCTG
ATGACACAGTATCTCCCGAATTGAAATAA

Upstream 100 bases:

>100_bases
CTCCCGTCAGTATTAAAATCAATTCATCAAGGGTTTACCATAACTATAAAGATCATATAATTAAAATATTATTTTATAAT
TATCTTGATAATTTTTAGTT

Downstream 100 bases:

>100_bases
CCAATCTTTATGTTTGCTTGCTAATTTAAGCGGTTTGGTGGATCGAATGTTTGAAAAACAGGAAGTGATTCATTGACATA
AAACCAGGGAGAGCCTAAAT

Product: LysR family transporter transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTAKGKAFYQKAREVAAQFMQLE
NSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLR
MPSIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSNSMPKWFVGDMYIRKQLILSGMGIGRLP
DHLVEKELAEGSLVQLNTRDYVAVTMDIYAMRLNNQEHGIVSNYAWQSLKSYADDTVSPELK

Sequences:

>Translated_302_residues
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTAKGKAFYQKAREVAAQFMQLE
NSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLR
MPSIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSNSMPKWFVGDMYIRKQLILSGMGIGRLP
DHLVEKELAEGSLVQLNTRDYVAVTMDIYAMRLNNQEHGIVSNYAWQSLKSYADDTVSPELK
>Mature_302_residues
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTAKGKAFYQKAREVAAQFMQLE
NSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLR
MPSIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSNSMPKWFVGDMYIRKQLILSGMGIGRLP
DHLVEKELAEGSLVQLNTRDYVAVTMDIYAMRLNNQEHGIVSNYAWQSLKSYADDTVSPELK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=279, Percent_Identity=29.0322580645161, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789492, Length=254, Percent_Identity=26.7716535433071, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082024, Length=282, Percent_Identity=25.177304964539, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790783, Length=294, Percent_Identity=26.1904761904762, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786508, Length=249, Percent_Identity=24.4979919678715, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788887, Length=253, Percent_Identity=26.4822134387352, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=160, Percent_Identity=29.375, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34558; Mature: 34558

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTA
CCCHHHHEEEEEEEECCCEEECCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
KGKAFYQKAREVAAQFMQLENSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
TCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLRMPSIRMIPVASRDYYDQHKE
HHHHCCCCHHHHHHHHHHHHHHHEEEEHHHCCCCCHHEEECCCEEEEEECCCHHHHHHHH
RINNPKLGIYCMQIMIAGTQQELYQLKIEPLSNSMPKWFVGDMYIRKQLILSGMGIGRLP
HCCCCCHHHHHHHHHHCCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
DHLVEKELAEGSLVQLNTRDYVAVTMDIYAMRLNNQEHGIVSNYAWQSLKSYADDTVSPE
HHHHHHHHCCCCEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
LK
CC
>Mature Secondary Structure
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTA
CCCHHHHEEEEEEEECCCEEECCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
KGKAFYQKAREVAAQFMQLENSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
TCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLRMPSIRMIPVASRDYYDQHKE
HHHHCCCCHHHHHHHHHHHHHHHEEEEHHHCCCCCHHEEECCCEEEEEECCCHHHHHHHH
RINNPKLGIYCMQIMIAGTQQELYQLKIEPLSNSMPKWFVGDMYIRKQLILSGMGIGRLP
HCCCCCHHHHHHHHHHCCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
DHLVEKELAEGSLVQLNTRDYVAVTMDIYAMRLNNQEHGIVSNYAWQSLKSYADDTVSPE
HHHHHHHHCCCCEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
LK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]