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The map label for this gene is yqfA [C]

Identifier: 148268615

GI number: 148268615

Start: 2341135

End: 2341818

Strand: Reverse

Name: yqfA [C]

Synonym: SaurJH9_2201

Alternate gene names: 148268615

Gene position: 2341818-2341135 (Counterclockwise)

Preceding gene: 148268616

Following gene: 148268614

Centisome position: 80.57

GC content: 31.87

Gene sequence:

>684_bases
ATGTCCAAATCAACTAAAAAAAGTAATGACACAATCGTAGAAACATTTAAGGATATCATCCCTTTATCATTTGGAGAAGA
AATTGGTAATGCGGCATCTCATGGTGTTGCAGCTTTGTTAACATTATTAGTGTTACCCTATGCGGCTGTGCACAGTTATA
TTGCACATGGTACGCTTGCGTCTGTGAGTATGTCTATTTATGTTATTTCTATCTTTATGATGTTTATTTCATCTACTATT
TATCATTCTATGCAAAATGAAACACCTCATAAATATATTTTAAGGATTATCGATCACAGTATGATTTACGTAGCAATTTC
TGGTACATATACGCCTATTTTGTTAACAGTTGTAGGTGGTTGGATAGGTTGGACAGTATTTATTTTATTATGGGGAACGA
CACTTTGGGGGATTTTATATAAATCCATAGCTGTCAAAGTTAACCAAAAGTTAAGCTTAATTGTCTATTTAGTGATGGGC
TGGGTAGGTATTATCTTGTTACCAATTATTTTTATTCGCACATCATGGATATTCATATTATTCATTTTCTTAGGTGGTGT
GTCTTATACAATTGGTGCATGGTTTTATGCACAAAAGAATAGACCATATTTTCATATGATTTGGCATATTTTTATTGTAA
TAGCATCACTATTGCATTTAATTGCGATCTTATATTTTATGTAG

Upstream 100 bases:

>100_bases
ATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAACTGCAACAGAAGATTTACGTAGAATGGGTTTAATTT
AATGATAGGCGGTGACTATG

Downstream 100 bases:

>100_bases
TCGTTTAGAAAAGCTGGGGGAAACTCCGCTTTTTTTATTACATAAATCATTCTAATAGGGGATTGTATTGTAATAGAATT
ATCGTTAAGATTTGAAAGTC

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTI
YHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMG
WVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM

Sequences:

>Translated_227_residues
MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTI
YHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMG
WVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
>Mature_226_residues
SKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTIY
HSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGW
VGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=202, Percent_Identity=33.1683168316832, Blast_Score=111, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=29.0476190476191, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25676; Mature: 25545

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLA
CCCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
WIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
HHHHHCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLA
CCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
WIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
HHHHHCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]