Click here to switch to the map view.

The map label for this gene is ybhE [C]

Identifier: 148268396

GI number: 148268396

Start: 2113838

End: 2114866

Strand: Reverse

Name: ybhE [C]

Synonym: SaurJH9_1978

Alternate gene names: 148268396

Gene position: 2114866-2113838 (Counterclockwise)

Preceding gene: 148268398

Following gene: 148268394

Centisome position: 72.76

GC content: 32.85

Gene sequence:

>1029_bases
ATGACAAATGGATATATTGGTTCTTACACTAAAAAGAATGGTAAAGGGATTTATCGTTTTGAATTAAACGAAAATCAGTC
ACGTATTGATTTATTAGAAATAGGATTTGAATTAGAAGCGTCTACATATTTGGTGCGTAATAACGAAGTTTTATATGGAA
TCAACAAAGAAGGAGAACAATGCGGTGTTGCGAGTTTGAAAATTGATGACAATGGTGAATTGCATTTATTAAATAAATGT
TTGTCTTCAAAAGCTGGTACAGGTTGTTATGTATCGATTTCAGAAGATAAACGATATTTATTTGAAGCGGTATATGGTGC
TGGCATCATACGTATGTATGAATTAAATACGCACACAGGTGAAATTATACGTCTAATTCAAGAACTTGCACATGATTTTC
CAACAGGTACACATGAAAGACAAGATCATCCACACGCACATTATATTAATCAAACTCCAGATGGTAAGTACGTTGCAGTA
ACAGATTTAGGTGCTGATCGTATCGTTACTTATAAATTTGATGACAACGGGTTTGAATTTTATAAAGAATCTTTATTTAA
AGATAGTGATGGGACAAGACATATTGAATTTCATGATAATGGAAAATTTGCTTATGTCGTACACGAATTATCAAATACTG
TGAGTGTTGCAGAATATAATGACGGTAAATTTGAAGAGCTCGAGCGTCATTTAACAATTCCTGAAAACTTTGATGGAGAT
ACTAAACTTGCAGCAGTGCGTTTGTCTCATGATCAACAATTCTTATATGTATCTAATAGAGGGCATGATAGCATTGCAAT
TTTTAAAGTTCTTGATAATGGTCAACACTTAGAACTAGTAACAATTACTGAAAGTGGTGGTCAATTCCCAAGAGATTTTA
ATATTGCCTCATCAGATGACCTTTTAGTTTGTGCTCATGAGCAAGGAGATTCAGTTGTAACTGTTTTTGAAAGAAGTAAA
GAAACAGGTAAAATTACTCTATGTGATAATACTCGTGTAGCATCTGAAGGTGTATGTGTCATATTTTAA

Upstream 100 bases:

>100_bases
TAGTTAAACAGTTTTAGCGTTAAGGAAATGATAAATGATTGTTAATTCTAGCTAAAATTTAATAAAATGAAAATAAGACT
GACATGGAGGGGTAAAAGTA

Downstream 100 bases:

>100_bases
TCTTTAATTAATCATGATAAAAAGAAAACCATGTTTACAAAAAATTTGTGTATACCTTGAAATTTATTGTTTTCAAGAAC
ATCAAATTATGGAAGCATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTNGYIGSYTKKNGKGIYRFELNENQSRIDLLEIGFELEASTYLVRNNEVLYGINKEGEQCGVASLKIDDNGELHLLNKC
LSSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTGEIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAV
TDLGADRIVTYKFDDNGFEFYKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGD
TKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDDLLVCAHEQGDSVVTVFERSK
ETGKITLCDNTRVASEGVCVIF

Sequences:

>Translated_342_residues
MTNGYIGSYTKKNGKGIYRFELNENQSRIDLLEIGFELEASTYLVRNNEVLYGINKEGEQCGVASLKIDDNGELHLLNKC
LSSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTGEIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAV
TDLGADRIVTYKFDDNGFEFYKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGD
TKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDDLLVCAHEQGDSVVTVFERSK
ETGKITLCDNTRVASEGVCVIF
>Mature_341_residues
TNGYIGSYTKKNGKGIYRFELNENQSRIDLLEIGFELEASTYLVRNNEVLYGINKEGEQCGVASLKIDDNGELHLLNKCL
SSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTGEIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAVT
DLGADRIVTYKFDDNGFEFYKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGDT
KLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDDLLVCAHEQGDSVVTVFERSKE
TGKITLCDNTRVASEGVCVIF

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family

Homologues:

Organism=Escherichia coli, GI1786983, Length=183, Percent_Identity=31.6939890710383, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1737_STAAN (Q7A4P4)

Other databases:

- EMBL:   BA000018
- PIR:   H89980
- RefSeq:   NP_375028.1
- ProteinModelPortal:   Q7A4P4
- STRING:   Q7A4P4
- EnsemblBacteria:   EBSTAT00000001023
- GeneID:   1124621
- GenomeReviews:   BA000018_GR
- KEGG:   sau:SA1737
- eggNOG:   COG2706
- GeneTree:   EBGT00050000025475
- HOGENOM:   HBG741123
- OMA:   QEKPHAH
- ProtClustDB:   CLSK885647
- BioCyc:   SAUR158879:SA1737-MONOMER
- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943
- Gene3D:   G3DSA:2.130.10.10

Pfam domain/function: PF10282 DUF2394; SSF51004 Cyt_cd1_haem_C

EC number: NA

Molecular weight: Translated: 38532; Mature: 38401

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNGYIGSYTKKNGKGIYRFELNENQSRIDLLEIGFELEASTYLVRNNEVLYGINKEGEQ
CCCCEECCCCCCCCCEEEEEEECCCCCEEEEEEECEEEECEEEEEECCEEEEEECCCCCC
CGVASLKIDDNGELHLLNKCLSSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTG
CCEEEEEECCCCCEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEEECCCHH
EIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAVTDLGADRIVTYKFDDNGFEF
HHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECCCCHHH
YKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGD
HHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
TKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDD
CEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCC
LLVCAHEQGDSVVTVFERSKETGKITLCDNTRVASEGVCVIF
EEEEEECCCCCEEEEEECCCCCCEEEEECCCEECCCCEEEEC
>Mature Secondary Structure 
TNGYIGSYTKKNGKGIYRFELNENQSRIDLLEIGFELEASTYLVRNNEVLYGINKEGEQ
CCCEECCCCCCCCCEEEEEEECCCCCEEEEEEECEEEECEEEEEECCEEEEEECCCCCC
CGVASLKIDDNGELHLLNKCLSSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTG
CCEEEEEECCCCCEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEEECCCHH
EIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAVTDLGADRIVTYKFDDNGFEF
HHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECCCCHHH
YKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGD
HHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
TKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDD
CEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCC
LLVCAHEQGDSVVTVFERSKETGKITLCDNTRVASEGVCVIF
EEEEEECCCCCEEEEEECCCCCCEEEEECCCEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146