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The map label for this gene is radC [C]

Identifier: 148268141

GI number: 148268141

Start: 1815887

End: 1816441

Strand: Reverse

Name: radC [C]

Synonym: SaurJH9_1718

Alternate gene names: 148268141

Gene position: 1816441-1815887 (Counterclockwise)

Preceding gene: 148268142

Following gene: 148268140

Centisome position: 62.49

GC content: 31.35

Gene sequence:

>555_bases
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTATTAACCATAGTATAA

Upstream 100 bases:

>100_bases
CGATTAAACTATTACCCCTTGTTCCATTTATATTTATTTCCTTTTTTATCAATTCACTTTTTTATAATGATATCCATCAA
TTTTTAGGAGGCGTATATTT

Downstream 100 bases:

>100_bases
TAAATAATAGTAGTTAAAGTAGTTTAAGAGGAGATATTAAAGGGATATTTTACTTTAAATAAAAATTAACAAGGTTTATA
ATTTGTAGTAGTTAAAGTAT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVLTIV

Sequences:

>Translated_184_residues
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVLTIV
>Mature_184_residues
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVLTIV

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=172, Percent_Identity=35.4651162790698, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788312, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788997, Length=99, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI2367100, Length=79, Percent_Identity=37.9746835443038, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 20360; Mature: 20360

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
CCHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC
TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
CCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCE
LTIV
EEEC
>Mature Secondary Structure
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
CCHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC
TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
CCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCE
LTIV
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA