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The map label for this gene is yrrB [H]

Identifier: 148268101

GI number: 148268101

Start: 1776747

End: 1777415

Strand: Reverse

Name: yrrB [H]

Synonym: SaurJH9_1677

Alternate gene names: 148268101

Gene position: 1777415-1776747 (Counterclockwise)

Preceding gene: 148268102

Following gene: 148268100

Centisome position: 61.15

GC content: 31.39

Gene sequence:

>669_bases
ATGATAGATCAACAAACAATTTATCAATACATACAAAATGGAAAAATAGAAGAAGCGTTACAAGCATTGTTCGGAAATAT
CGAAGAAGATCCTACAATTATTGAAAATTATATTAATGCTGGTATCGTACTTGCTGATGCGAATGAGATTGAAAAGGCAG
AGCGTTTTTTCCAAAAAGCTTTAACAATAGATCCGAAGAATGGCGTCGTATTTTATAATCTAGCAAATGTATATTATAAT
CAGCAACGTTATCAAGAAGCTATTAAATTATATCAACAAGCATTACAAACAGAGATTGAACAAGTTGATTGTAATTATAT
GATCGGTATGGCGTTTAATCAGTTAGAATCATTTAAGCTGGCATTGCCGTATTTAATGACTGCTGCGGAACTAGATAAAG
ACAAAGATGCAGAAGTTCAATTTCAATATGGTCTTGTATTATGTCAATTAGAAATGTTTAATGAAGCCATAACTCAACTT
AAACATGTATTAACGATTGATAAAAATCATGTTGATGCAAGATACAATTTGGGCTTAGCGTTATTTATGAAAAATGAAGA
TATTGATGAAGCAATAACTCATTTTAAAGAAGCTGTGACTATCGACCCTAAACACTTATTAAGTCAGCATGCGCTGAAAA
CATTCACTAAAATGAAAGAGGAGGAGTAA

Upstream 100 bases:

>100_bases
TGAATGAAAATGATATTAGATTATATTTTATTCGTTGTTAAGTGATTCGAGACATACAATTTATCAAGATGTTATAATTG
ATGAGAAATGAGGTTCGTAA

Downstream 100 bases:

>100_bases
CATGTCAGACCCTACACTATTTGATTATTCAATGATCAAAGGTACTGTTGAAGCGATATTGTTTCAAAACAGTGATAATT
TTTATACAGTGCTTAAAGTA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYN
QQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL
KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE

Sequences:

>Translated_222_residues
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYN
QQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL
KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>Mature_222_residues
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYN
QQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL
KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Caenorhabditis elegans, GI115532692, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 25719; Mature: 25719

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKA
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
LTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKL
HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
ALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLA
HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEE
LFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
EEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKA
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
LTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKL
HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
ALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLA
HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEE
LFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
EEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]