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The map label for this gene is rbfA [H]

Identifier: 148267760

GI number: 148267760

Start: 1387806

End: 1388198

Strand: Direct

Name: rbfA [H]

Synonym: SaurJH9_1330

Alternate gene names: 148267760

Gene position: 1387806-1388198 (Clockwise)

Preceding gene: 148267759

Following gene: 148267761

Centisome position: 47.75

GC content: 30.28

Gene sequence:

>393_bases
ATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAAT
GAAGAAGGAATTAATGGATATCATCAACAATAAAGTCAAAGATCCTCGAGTTGGTTTTATTACAATTACAGATGTTGTTT
TAACAAATGATTTATCGCAGGCTAAAGTATTTTTAACTGTATTAGGTAACGATAAAGAAGTAGAAAATACATTTAAAGCA
CTTGATAAAGCAAAAGGCTTCATTAAGTCTGAATTAGGTTCTAGAATGCGATTACGTATTATGCCGGAATTAATGTATGA
ATATGATCAATCAATCGAATATGGTAATAAAATTGAACGAATGATTCAAGATTTACACAAACAAGATAGATAA

Upstream 100 bases:

>100_bases
AATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTT
AAGCATTGTTACACTAAAAA

Downstream 100 bases:

>100_bases
TTTAGTGTTAGGTATCTGGAAAATGTTTGATAATTTCTTAATATCGGTATATTAACATTAAACAGTTAATACATAGATGT
GTAGAAATAGTTAACATTTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MQITIELKDKEVTRMSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEVENTFKA
LDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR

Sequences:

>Translated_130_residues
MQITIELKDKEVTRMSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEVENTFKA
LDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR
>Mature_130_residues
MQITIELKDKEVTRMSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEVENTFKA
LDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=115, Percent_Identity=42.6086956521739, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15201; Mature: 15201

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITIELKDKEVTRMSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHH
AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
HEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
MIQDLHKQDR
HHHHHHHCCC
>Mature Secondary Structure
MQITIELKDKEVTRMSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHH
AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
HEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
MIQDLHKQDR
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA