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The map label for this gene is rpoZ

Identifier: 148267701

GI number: 148267701

Start: 1316233

End: 1316451

Strand: Direct

Name: rpoZ

Synonym: SaurJH9_1269

Alternate gene names: 148267701

Gene position: 1316233-1316451 (Clockwise)

Preceding gene: 148267700

Following gene: 148267702

Centisome position: 45.28

GC content: 32.42

Gene sequence:

>219_bases
ATGTTAAATCCACCTTTAAACCAATTAACGTCACAAATTAAATCAAAGTATTTAATTGCAACAACTGCAGCGAAAAGAGC
GCGTGAAATTGATGAACAACCTGAAACTGAATTATTAAGTGAATATCATTCATTTAAACCAGTTGGTAGAGCGTTAGAAG
AAATTGCTGACGGTAAAATTCGCCCTGTTATTTCAAGTGATTATTATGGTAAAGAATAG

Upstream 100 bases:

>100_bases
TTGCGAAGAATAGAATTCAATGTATTGTAGAAGCTGAGCACTTAAAAAGAGAGCGCGTAGAAGCTAAGTATAGAAAAATG
ATTTTGGAGGCTAAAAAATA

Downstream 100 bases:

>100_bases
TTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGG
TGTGTTTTTTTAGTTTATCC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKIRPVISSDYYGKE

Sequences:

>Translated_72_residues
MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKIRPVISSDYYGKE
>Mature_72_residues
MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKIRPVISSDYYGKE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_STAA1 (A7X1G4)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441790.1
- STRING:   A7X1G4
- EnsemblBacteria:   EBSTAT00000004375
- GeneID:   5559401
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1200
- eggNOG:   COG1758
- GeneTree:   EBGT00050000024949
- HOGENOM:   HBG742204
- OMA:   PVVPKEY
- ProtClustDB:   PRK00392
- BioCyc:   SAUR418127:SAHV_1200-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8150; Mature: 8150

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
RPVISSDYYGKE
CCCCCCCCCCCC
>Mature Secondary Structure
MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
RPVISSDYYGKE
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA