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The map label for this gene is ylmH [H]

Identifier: 148267683

GI number: 148267683

Start: 1294220

End: 1295026

Strand: Direct

Name: ylmH [H]

Synonym: SaurJH9_1250

Alternate gene names: 148267683

Gene position: 1294220-1295026 (Clockwise)

Preceding gene: 148267682

Following gene: 148267684

Centisome position: 44.53

GC content: 30.73

Gene sequence:

>807_bases
ATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTATCAACACTTTAGACAGGAAGAATACGAATTAAT
TGATCAGCTAACGGATAAATGTGATCAAGCGGAACAACATTATGCACCAGTATTAACGCATTTTTTAGATCCAAGAGGGC
AATATATATTGGAAGTGATTTGTGGCAGTTATGAAGATTTAAACGTCTCTTTTTATGGCGGGCCTAATGCTGAAAGAAAA
AGAGCAATCATTTCGCCGAACTATTATGAACCTAAAGAAAGTGACTTTGAATTAACTTTAATGGAAATAGAGTATCCTGA
AAAATTCGTCACTTTAAAACATCAACATATTTTAGGGACATTAATGTCTTTAGGTATCGAACGCGAACAAGTTGGAGATA
TAATTGTGAATGAACGAATTCAATTTGTTTTGACAAGTAGATTGGAATCATTTATTATGTTAGAATTACAACGTATTAAA
GGCGCATCAGTTAAACTTTATACTATTCCAGTAACAGATATGATACAATCTAATGAGAATTGGAAAAATGAAAGTGCAAC
AGTTAGTTCTTTAAGGTTAGATGTTGTTATTAAAGAAATGATACGTAAATCACGTACGATTGCGAAACAACTAATTGAAA
AAAAACGTGTTAAAGTGAATCACACTATTGTTGATTCAGCAGATTTTCAATTACAAGCAAATGATTTAATATCCATCCAA
GGTTTTGGTAGAGCACACATTACTGACTTAGGTGGTAAAACTAAAAAAGATAAAACGCACATTACCTATAGAACATTATT
CAAATAG

Upstream 100 bases:

>100_bases
TTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGTATTTT
TCTGAATATAAGGGCAATAG

Downstream 100 bases:

>100_bases
TAATGATTTAAGGAGGATAACAAATGCCTTTTACACCAAATGAAATTAAGAATAAAGAGTTTTCACGTGTAAAGAATGGT
TTAGAACCTACTGAAGTTGC

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVICGSYEDLNVSFYGGPNAERK
RAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIK
GASVKLYTIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
GFGRAHITDLGGKTKKDKTHITYRTLFK

Sequences:

>Translated_268_residues
MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVICGSYEDLNVSFYGGPNAERK
RAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIK
GASVKLYTIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
GFGRAHITDLGGKTKKDKTHITYRTLFK
>Mature_268_residues
MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVICGSYEDLNVSFYGGPNAERK
RAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIK
GASVKLYTIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
GFGRAHITDLGGKTKKDKTHITYRTLFK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 31215; Mature: 31215

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVI
CCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGT
HCCCCCCEEEEECCCCHHHCEEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH
LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCCCC
WKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECCCCCEEECCCEEEEE
GFGRAHITDLGGKTKKDKTHITYRTLFK
CCCCEEEECCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVI
CCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
CGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGT
HCCCCCCEEEEECCCCHHHCEEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH
LMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEN
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCCCC
WKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECCCCCEEECCCEEEEE
GFGRAHITDLGGKTKKDKTHITYRTLFK
CCCCEEEECCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]