Click here to switch to the map view.

The map label for this gene is isdF

Identifier: 148267626

GI number: 148267626

Start: 1235281

End: 1236249

Strand: Direct

Name: isdF

Synonym: SaurJH9_1193

Alternate gene names: 148267626

Gene position: 1235281-1236249 (Clockwise)

Preceding gene: 148267625

Following gene: 148267627

Centisome position: 42.5

GC content: 32.71

Gene sequence:

>969_bases
ATGATGATAAAAAATAAAAAGAAACTACTATTTTTATGTTTGTTAGTCATTTTAATCGCAACTGCTTATATTTCGTTTGT
AACCGGTACAATTAAATTGTCATTTAATGACCTATTTACAAAATTTACAACTGGTAGCAATGAAGCAGTGGATTCAATCA
TTGATTTGCGATTGCCACGTATATTAATTGCATTGATGGTTGGCGCAATGTTAGCAGTTTCTGGAGCATTATTACAAGCA
GCACTACAAAATCCTTTGGCAGAGGCGAATATCATTGGCGTTTCCTCAGGTGCACTTATAATGAGAGCACTTTGTATGTT
GTTTATTCCACAATTGTACTTTTACTTACCATTATTAAGTTTTATTGGAGGTTTAATACCATTTTTAATAATTATATTGT
TGCATTCTAAATTTAGATTCAATGCTGTAAGTATGATATTAGTAGGTGTTGCGTTATTCGTATTATTAAATGGTGTTTTA
GAAATTTTAACTCAAAACCCTTTAATGAAAATTCCTCAAGGCTTAACAATGAAAATATGGAGCGACGTATACATATTAGC
AGTATCAGCATTATTGGGATTAATATTAACATTACTATTGTCCCCTAAATTGAATTTACTAAATTTAGACGACATACAAG
CGCGAAGTATCGGTTTTAATATTGATCGTTACAGATGGTTAACAGGTTTATTAGCAGTATTTTTAGCAAGTGCAACTGTT
GCGATTGTTGGACAACTAGCCTTTTTAGGTATTATTGTGCCACATGTGGTTAGAAAGCTAGTTGGGGGCAATTACAGAGT
ACTTATTCCGTTTTCTACAGTTATTGGTGCATGGCTATTGTTAGTGGCTGATTTATTAGGACGAGTGATACAGCCTCCTT
TAGAAATTCCAGCCAATGCTATTTTAATGATTGTCGGTGGTCCAATGCTAATTTACTTAATTTGTCAAAGTCAACGAAAT
CGAATCTAA

Upstream 100 bases:

>100_bases
AGAGGAAGTGCCATTCGGTATTACAGCAAATGTTGATGCTGATAAGGCAATGACTCAATTATATGATTTATTTTATAAGG
ATAAAAAATAGTGAGTTGAT

Downstream 100 bases:

>100_bases
AACGGTACAACAACTGGTTTAGTGATGACTGAAGAAACGTCGTTAATAAAAGAGGATTTTTATGAGAATGAAGCGATTTT
TAACTATTGTACAAATTTTA

Product: transport system permease protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Iron-regulated surface determinant protein F; Staphylococcal iron-regulated protein G

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQA
ALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVL
EILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATV
AIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRN
RI

Sequences:

>Translated_322_residues
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQA
ALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVL
EILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATV
AIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRN
RI
>Mature_322_residues
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQA
ALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVL
EILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATV
AIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRN
RI

Specific function: Part of the binding-protein-dependent transport system for heme-iron. Responsible for the translocation of the substrate across the membrane

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily

Homologues:

Organism=Escherichia coli, GI1790740, Length=307, Percent_Identity=35.5048859934853, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1790741, Length=302, Percent_Identity=32.1192052980132, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1786347, Length=303, Percent_Identity=29.042904290429, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786804, Length=334, Percent_Identity=28.1437125748503, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786805, Length=294, Percent_Identity=32.312925170068, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788004, Length=282, Percent_Identity=29.7872340425532, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ISDF_STAA1 (A7X154)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441715.1
- ProteinModelPortal:   A7X154
- SMR:   A7X154
- STRING:   A7X154
- EnsemblBacteria:   EBSTAT00000002742
- GeneID:   5560684
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1125
- eggNOG:   COG0609
- GeneTree:   EBGT00050000023880
- HOGENOM:   HBG700016
- ProtClustDB:   CLSK885156
- BioCyc:   SAUR418127:SAHV_1125-MONOMER
- InterPro:   IPR000522

Pfam domain/function: PF01032 FecCD

EC number: NA

Molecular weight: Translated: 35176; Mature: 35176

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf3b0754)-; HASH(0xe78814c)-; HASH(0xeeb3a68)-; HASH(0xee41568)-; HASH(0xf31ab74)-; HASH(0xc505e78)-; HASH(0xf29fb20)-; HASH(0xebb9db8)-; HASH(0xc702450)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
ILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
FIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHH
SDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATV
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANA
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
ILMIVGGPMLIYLICQSQRNRI
EEEEECCHHHHHHHHHHHCCCH
>Mature Secondary Structure
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
ILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
FIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHH
SDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATV
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANA
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
ILMIVGGPMLIYLICQSQRNRI
EEEEECCHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA