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The map label for this gene is ylbH [H]

Identifier: 148267616

GI number: 148267616

Start: 1225918

End: 1226460

Strand: Direct

Name: ylbH [H]

Synonym: SaurJH9_1183

Alternate gene names: 148267616

Gene position: 1225918-1226460 (Clockwise)

Preceding gene: 148267614

Following gene: 148267617

Centisome position: 42.18

GC content: 31.68

Gene sequence:

>543_bases
ATGCGCGTCATTGCAGGTAAACATAAAAGTAAAGCTTTAGAAAGTATGGAAGGCCGTAATACGAGACCAACTATGGATAA
AGTTAAAGAAGGTATCTTTAATAGTTTATATGATGTGTCAGGTATAGGTTTAGATTTATTTGCAGGAAGCGGGGCGCTTG
GAATAGAAGCACTCTCTCGAGGTATGGATAAGGTAATCTTTGTTGATCAAAATTTTAAAGCTGTAAAAGTTATTAAATCA
AATCTTGCGAATTTGGATTTAGAGGCACAATCTGAAGTTTATAAAAATAATGCAGATAGAGCTTTAAAAGCATTGTCAAA
ACGTGATATTCAATTTGATGTCATTTTCTTAGATCCACCTTATAATAAAGGTCTCATTGATAAAGCTTTAAAACTAATTT
CAGAGTTTAATTTATTGAAAGAAAATGGTATCATCGTTTGTGAATTTAGCAATCATGAAGAAATAGACTATCAACCGTTT
AATATGATTAAACGTTACCATTATGGGTTGACAGACACATTGTTATTAGAAAAGGGAGAATAG

Upstream 100 bases:

>100_bases
CTTCACCAAGTGTAATAAATGTTTGTTTCATTGGTTTATCATTCTCCTTTTTCTCAATAAATTATATTAAATAACTAAAT
GAATTGGAAGTGTGAACAAC

Downstream 100 bases:

>100_bases
CATGGAACATACAATAGCGGTCATTCCGGGTAGTTTTGACCCCATTACTTATGGTCATTTAGACATTATTGAGAGAAGTA
CAGATAGATTTGATGAAATT

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSRGMDKVIFVDQNFKAVKVIKS
NLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPF
NMIKRYHYGLTDTLLLEKGE

Sequences:

>Translated_180_residues
MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSRGMDKVIFVDQNFKAVKVIKS
NLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPF
NMIKRYHYGLTDTLLLEKGE
>Mature_180_residues
MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSRGMDKVIFVDQNFKAVKVIKS
NLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPF
NMIKRYHYGLTDTLLLEKGE

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=164, Percent_Identity=29.8780487804878, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20247; Mature: 20247

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHC
GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
CCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCC
YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
>Mature Secondary Structure
MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHC
GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
CCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCC
YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]