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The map label for this gene is ycjC [C]

Identifier: 148267591

GI number: 148267591

Start: 1200893

End: 1201432

Strand: Direct

Name: ycjC [C]

Synonym: SaurJH9_1158

Alternate gene names: 148267591

Gene position: 1200893-1201432 (Clockwise)

Preceding gene: 148267590

Following gene: 148267592

Centisome position: 41.31

GC content: 29.81

Gene sequence:

>540_bases
ATGAACATAGGTAATAAAATTAAAAATCTTAGAAGAATTAAAAATTTAACGCAAGAAGAACTTGCTGAACGTACAGACTT
ATCGAAAGGCTACATTTCACAAATAGAAAGTGAACATGCCTCACCAAGTATGGAAACTTTCTTAAATATTATAGAGGTGT
TAGGAACGACGCCAAGTGAATTTTTTAAAGACAGTGAAAATGAAAAAGTATTATACAAGAAGGAAGAACAAGTTATTTAT
GATGAGTATGATGAAGGTTATATATTAAATTGGTTAGTTTCAAAGTCAAATGAATATGATATGGAGCCATTAATATTAAC
TTTAAAGCCTGGAGCATCATATAAAAATTTTAATCCATCAGAGTCTGATACGTTTATTTATTGTATGTCAGGTCAGATAA
CACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTG
TCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAG

Upstream 100 bases:

>100_bases
ACTATTGCTAATAAAGCTATATTTTGATACCTTTATCAAGTGTTAAACAAAATGTTTGATAAAAGTAAACTTAATATAGC
TTTTTTAGGTGGAAAAATAA

Downstream 100 bases:

>100_bases
GGGGGATCTTATTTGGAACCGTTATTATCATTAAAATCAGTTAGTAAAAGCTATGATGATCTTAATATCTTAGATGACAT
AGATATTGATATTGAATCAG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Cro/CI Family; Cro/CI Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; MerR Family Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Transcription Regulator; Transcription Regulator Protein; Transcriptional Regulator Xre Familiy; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Xre Family; Transcriptional Regulator Merr Family; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFKDSENEKVLYKKEEQVIY
DEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPSESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRL
SNESNNETRILIVATASYL

Sequences:

>Translated_179_residues
MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFKDSENEKVLYKKEEQVIY
DEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPSESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRL
SNESNNETRILIVATASYL
>Mature_179_residues
MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFKDSENEKVLYKKEEQVIY
DEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPSESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRL
SNESNNETRILIVATASYL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20745; Mature: 20745

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
HHCCCCCCEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
CCCEEEEEECCEEEEECCHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
HHCCCCCCEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
CCCEEEEEECCEEEEECCHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA