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The map label for this gene is yugI [H]

Identifier: 148267389

GI number: 148267389

Start: 998664

End: 999041

Strand: Direct

Name: yugI [H]

Synonym: SaurJH9_0955

Alternate gene names: 148267389

Gene position: 998664-999041 (Clockwise)

Preceding gene: 148267388

Following gene: 148267390

Centisome position: 34.36

GC content: 32.8

Gene sequence:

>378_bases
TTGAATAACTACAAAATTGGCCAACATATCAAGGTGCGTGTAACTGGTATTCAACCATACGGTGCGTTTGTTGAGACCCC
TAATCATACTGAAGGACTGATTCATATATCAGAAATTATGGATGACTACGTTCATAATTTGAAGAAATTTCTATCAGAAG
GCCAAATTGTTAAAGCTAAAATTTTGTCTATAGATGATGAAGGAAAGCTTAATCTATCATTAAAGGATAATGATTACTTC
AAAAATTATGAGCGTAAGAAGGAAAAACAATCAGTATTAGATGAAATCAGAGAAACAGAAAAATATGGGTTTCAAACACT
TAAAGAACGCTTACCAATCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAA

Upstream 100 bases:

>100_bases
TATAAAATAATATTCGTATGATTTGATGTTTTAATTAGTCCACCATTTCGATTTGTGCTATGATAATAGTGTTAAGTAAA
CGAAATAAGGGGTTATTAAG

Downstream 100 bases:

>100_bases
AGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCT
ATTAAATTTTATTAGATACT

Product: RNA-binding S1 domain-containing protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: GSP13 [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYF
KNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND

Sequences:

>Translated_125_residues
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYF
KNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>Mature_125_residues
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYF
KNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

None

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR000110
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 14723; Mature: 14723

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAK
CCCCCCCCEEEEEEEEECCCCCEEECCCCCCHHEEHHHHHHHHHHHHHHHHCCCCEEEEE
ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
EEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AIRND
HCCCC
>Mature Secondary Structure
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAK
CCCCCCCCEEEEEEEEECCCCCEEECCCCCCHHEEHHHHHHHHHHHHHHHHCCCCEEEEE
ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
EEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AIRND
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377; 9298659 [H]